RNA id: TCONS_00027161


Basic Information

Item Value
RNA id TCONS_00027161
length 349
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_013030
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 43638903 ~ 43746228 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAAAGATGGCTGAGCCTAAGGAAAAGGTTAAGCGTTATTTTACTGGAAAAAGAAGCGTTACAAATGCTGACTTGCATTAATAAGCATTCATCGCTGGCGAGATAATACTTATTGGAGGGCTTGAAAACGGTCGTGGGGATTTTTTCAGCTTGACACTGCTTCACCGTACTCAAAGCTGAGCATGctgcatcacaagtacaacaccatacaagaACATTGACTCCACATTGTTTTGTAAACAAGCCACAGTTTAATGGAAGCTTGAAGTGAAAGATGAAACAGTCAGCTGTACTGGATCTGACAGCAAATGCACTGCAAACTAACTCTTGGTTGCCCTGGTGGAAAAC

Function

GO:

id name namespace
GO:0045184 establishment of protein localization biological_process
GO:0008104 protein localization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027156 lncRNA upstream 183036 43450087 ~ 43456039 (+) True XLOC_013029
TCONS_00027155 lncRNA upstream 846718 42787313 ~ 42792357 (+) True XLOC_013026
TCONS_00027154 lncRNA upstream 859545 42773594 ~ 42779530 (+) True XLOC_013025
TCONS_00026930 lncRNA upstream 866342 42772316 ~ 42772733 (+) True XLOC_013024
TCONS_00027153 lncRNA upstream 985120 42653154 ~ 42653955 (+) True XLOC_013023
TCONS_00026931 lncRNA downstream 379531 44028378 ~ 44036462 (+) False XLOC_013033
TCONS_00026932 lncRNA downstream 385386 44034233 ~ 44040502 (+) False XLOC_013033
TCONS_00025909 lncRNA downstream 386870 44035717 ~ 44040502 (+) True XLOC_013033
TCONS_00027163 lncRNA downstream 942360 44591207 ~ 44592617 (+) True XLOC_013039
TCONS_00025933 lncRNA downstream 1147045 44795892 ~ 44801995 (+) False XLOC_013045
TCONS_00025904 mRNA upstream 198894 43365890 ~ 43440181 (+) True XLOC_013028
TCONS_00025903 mRNA upstream 412572 43183749 ~ 43226503 (+) True XLOC_013027
TCONS_00025901 mRNA upstream 413143 42970208 ~ 43225932 (+) False XLOC_013027
TCONS_00025898 mRNA upstream 1800656 41820039 ~ 41838419 (+) True XLOC_013019
TCONS_00025897 mRNA upstream 1830334 41772474 ~ 41808741 (+) True XLOC_013018
TCONS_00025907 mRNA downstream 242204 43891051 ~ 43894087 (+) True XLOC_013031
TCONS_00025910 mRNA downstream 432101 44080948 ~ 44120157 (+) True XLOC_013034
TCONS_00025913 mRNA downstream 883352 44532199 ~ 44543297 (+) False XLOC_013037
TCONS_00025914 mRNA downstream 883523 44532370 ~ 44564752 (+) False XLOC_013037
TCONS_00025915 mRNA downstream 883821 44532668 ~ 44541411 (+) False XLOC_013037
TCONS_00025902 other upstream 413369 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025900 other upstream 860312 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025899 other upstream 1707242 41931719 ~ 41931833 (+) True XLOC_013020
TCONS_00025895 other upstream 1925885 41713076 ~ 41713190 (+) True XLOC_013017
TCONS_00025894 other upstream 1970766 41668184 ~ 41668309 (+) True XLOC_013016
TCONS_00025908 other downstream 357725 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025911 other downstream 470290 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025912 other downstream 504827 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025934 other downstream 1166660 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025939 other downstream 1401988 45050835 ~ 45050950 (+) True XLOC_013048

Expression Profile

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