RNA id: TCONS_00026932


Basic Information

Item Value
RNA id TCONS_00026932
length 1670
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id XLOC_013033
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44028378 ~ 44040502 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtccacTGTGTGTTGGTGACAACAAAATGTTGGAGTAAAAACATAGACTGAACTTGAGGCTGCGGGTGACCTGATCCGATGAACTCACTACACAGACCTCAGAACCGCAGAAGGCCATGGTGTGACTGCTGTATAAACATGTCTTCCTCGACTTCAGCCATCGTTCCATCGTTCGCACTCTAACTGACAGCGGGAAACCTTTAGCGACACAATCTCTCCACTGTGGCACCTCGCGATATTTGCAAACAAGTAACAGTCAGATGGGATTTCAGAAAGTCCTGTCCATGGGCCTGCTCAATAATGAATGATGCAGTGCCACCTCCAGACACACtatacctctctctctcttcagagAATGAAAGAAACCATACGAGGCACACCAGGCCAATCATTTCCTGAAGTTTGTGGCACCATGGGGATCGCGCGATTCTTCCTCCTGCTCAGTTGCTTCCTCTTGGTTTTTGTACAAGGTCTAGACATCCCTGACCCGGATGAAATTGAGTACATCAGACAACAGGAAGAAGCGACAGTAAACGGCACTGTCCACCTTTATTGTGGATCTGATGTTCCCACACTGTTCATCTGGGTGTTCTCCCGGCCTGGCACAGAGAGAAATGAGCCTTTGGCATACAACTACGGCCAGGGGTCGAAACTCCTGTCCTTAGCCAGCACCCTTGGAGAGATTTCCTTGCTCACCAACACAACCACTCTTGTGATTGAAGGGGTTTCAGAAGAGGCTGAGGGGGTATACACTTGCCAGGCCCTATACGACATGGATGAACCGCCTAAGGTTAGGTTTTACTACACCCAGCTGCACCTGCAGGATGAAGAGGAGAGATCCAGGGGGTCGGGATCTCCACCACCGGACAGTGACTAAAGGACAGGTCGACTAACtagaatacatatttttaaagtgaTAACTGTATTGAGAAGTTTATGAAGTTAACTTGTTAACCGAAGTCCAGGAGCGAGACCATGCCTCACTTTGCCTCCTTATCCAATCATCtactgcaggggtcaccaaacttgtattgcagattttagctcctaccctaatcaaacacacctgatcaaagtaatcaaggtcttgctaggtatacttgaaacatccaggcaggtgtgttgaggcaagttggagctaaaccctgcagggacactagccctccaggaccgacattggtgacccctgatctactgCTTAAACTTATTTAAGGAAGATcagccctctagcactgttcATCTCATTCTCTCAAACCCACTCTCCATCCTTCCTTATAACCTTCTCTCCCCTCCTTGGTTGAATTGGGGGAGTCCTAATCACCCTACCAAAACATTACAGAGATGCtacccccactctgagtctctgggcatcaGCGTTGATTGCCAAATCAATGAATCTGCTTGTTTATAATTGCGTTACTTTTATTCCTCTTCATCCCCCTCTTCCTTACCATCCCTTTTCATCCCTACATCCCCACAACAAAGACTGCCTCAAAGTGTGGTGTGGTCGATGTTGGTGAAACAGTATTTATGTGAAGGTAAATTCACTGCAATTCATTTACGTTTAGAGGTAACATCCCTAGAGTAACTTGTTTACCCTTTAAGATATGAAATGagttataaatacaaataaactgaTGTTCATTGTGTGATCTGTTTACTTCTTTTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027158 lncRNA upstream 288005 43638903 ~ 43746228 (+) False XLOC_013030
TCONS_00027163 lncRNA downstream 550705 44591207 ~ 44592617 (+) True XLOC_013039
TCONS_00025933 lncRNA downstream 755390 44795892 ~ 44801995 (+) False XLOC_013045
TCONS_00025936 lncRNA downstream 816131 44856633 ~ 44863333 (+) True XLOC_013046
TCONS_00025937 lncRNA downstream 894671 44935173 ~ 44980093 (+) False XLOC_013047
TCONS_00025938 lncRNA downstream 894689 44935191 ~ 44948995 (+) False XLOC_013047
TCONS_00025907 mRNA upstream 140146 43891051 ~ 43894087 (+) True XLOC_013031
TCONS_00025904 mRNA upstream 594052 43365890 ~ 43440181 (+) True XLOC_013028
TCONS_00025903 mRNA upstream 807730 43183749 ~ 43226503 (+) True XLOC_013027
TCONS_00025901 mRNA upstream 808301 42970208 ~ 43225932 (+) False XLOC_013027
TCONS_00025898 mRNA upstream 2195814 41820039 ~ 41838419 (+) True XLOC_013019
TCONS_00025910 mRNA downstream 40446 44080948 ~ 44120157 (+) True XLOC_013034
TCONS_00025913 mRNA downstream 491697 44532199 ~ 44543297 (+) False XLOC_013037
TCONS_00025914 mRNA downstream 491868 44532370 ~ 44564752 (+) False XLOC_013037
TCONS_00025915 mRNA downstream 492166 44532668 ~ 44541411 (+) False XLOC_013037
TCONS_00025916 mRNA downstream 492381 44532883 ~ 44566188 (+) True XLOC_013037
TCONS_00025908 other upstream 27545 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025902 other upstream 808527 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025900 other upstream 1255470 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025899 other upstream 2102400 41931719 ~ 41931833 (+) True XLOC_013020
TCONS_00025895 other upstream 2321043 41713076 ~ 41713190 (+) True XLOC_013017
TCONS_00025911 other downstream 78635 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025912 other downstream 113172 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025934 other downstream 775005 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025939 other downstream 1010333 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025943 other downstream 1218479 45258981 ~ 45259097 (+) True XLOC_013050

Expression Profile

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