RNA id: TCONS_00025915


Basic Information

Item Value
RNA id TCONS_00025915
length 505
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_013037
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44532199 ~ 44566188 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGATAGCTCGTTTAATCCTCCAACTGCTTGTGTTTCAGATTTGGAGTTTGTTTTAGGATCTCGTTTCGAAGAATTCgttatatttatttgcttttatttcgTTGCACTTGTTATGGGCGTGTTGTTTTCTACAGTCGTCTGATACTAGCAAAATAGCAAACCTGTTTTACTTTTCCGCTCACCATACACAACCCGATTTATTTTTGTCAACAGAAGTGGAAGTGTGAGGAGAAAGGTGTGTTGATTTTGATTCTGCCAGTGGTCTCTCAAAAATGGACCCTATGGATGGAGGAATGCGTTACACTCCTGGTTCTACGgACAAGGACTGGGACCAAGCTGTCACATTTTTGCCTGCATCAGATCATAAAAAGATGGAGAAGAAAAAGGGCCCTGGGAAAATTGGGATCATTGTTGGTCTGGTGATCCTGGCAGCTGTTTTGGCTTTGATCATAGGGCTTGTGGTCTGGCATTTCCATTTCCGGAATGATTTGAAGTTGCAGAAG

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6496 Enables peptidase activity. Involved in protein processing. Acts upstream of or within epidermis development and morphogenesis of an epithelium. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; gut; lateral line primordium; otic vesicle; and primitive olfactory epithelium. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 11. Orthologous to human ST14 (ST14 transmembrane serine protease matriptase).

Ensembl:

ensembl_id ENSDART00000140672

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026932 lncRNA upstream 492166 44034233 ~ 44040502 (+) False XLOC_013033
TCONS_00025909 lncRNA upstream 492166 44035717 ~ 44040502 (+) True XLOC_013033
TCONS_00026931 lncRNA upstream 496206 44028378 ~ 44036462 (+) False XLOC_013033
TCONS_00027162 lncRNA upstream 802184 43639080 ~ 43730484 (+) True XLOC_013030
TCONS_00027161 lncRNA upstream 883821 43639075 ~ 43648847 (+) False XLOC_013030
TCONS_00027163 lncRNA downstream 49796 44591207 ~ 44592617 (+) True XLOC_013039
TCONS_00025933 lncRNA downstream 254481 44795892 ~ 44801995 (+) False XLOC_013045
TCONS_00025936 lncRNA downstream 315222 44856633 ~ 44863333 (+) True XLOC_013046
TCONS_00025937 lncRNA downstream 393762 44935173 ~ 44980093 (+) False XLOC_013047
TCONS_00025938 lncRNA downstream 393780 44935191 ~ 44948995 (+) False XLOC_013047
TCONS_00025910 mRNA upstream 412511 44080948 ~ 44120157 (+) True XLOC_013034
TCONS_00025907 mRNA upstream 638581 43891051 ~ 43894087 (+) True XLOC_013031
TCONS_00025904 mRNA upstream 1092487 43365890 ~ 43440181 (+) True XLOC_013028
TCONS_00025903 mRNA upstream 1306165 43183749 ~ 43226503 (+) True XLOC_013027
TCONS_00025901 mRNA upstream 1306736 42970208 ~ 43225932 (+) False XLOC_013027
TCONS_00025917 mRNA downstream 25452 44566863 ~ 44589785 (+) False XLOC_013038
TCONS_00025918 mRNA downstream 25780 44567191 ~ 44590092 (+) True XLOC_013038
TCONS_00025919 mRNA downstream 89004 44630415 ~ 44650095 (+) False XLOC_013040
TCONS_00025920 mRNA downstream 90378 44631789 ~ 44646968 (+) False XLOC_013040
TCONS_00025921 mRNA downstream 108393 44649804 ~ 44663244 (+) True XLOC_013040
TCONS_00025912 other upstream 378397 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025911 other upstream 413406 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025908 other upstream 525980 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025902 other upstream 1306962 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025900 other upstream 1753905 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025934 other downstream 274096 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025939 other downstream 509424 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025943 other downstream 717570 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00025947 other downstream 985072 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025985 other downstream 2035610 46577021 ~ 46577139 (+) True XLOC_013073

Expression Profile

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