RNA id: TCONS_00025919


Basic Information

Item Value
RNA id TCONS_00025919
length 9391
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_013040
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44630415 ~ 44663244 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGACATGGATGATGAAGATGGCAGGTGCTTGCTAGATGTAATTTGTGACCCACAAGCACTCAACGATTTTCTTCATGGATCAGAAACACAAGGCCATGTTCCTGAGGTTCCGGCACAGGTTCAGCTGTCGACAAGTGAGCCGGGCCTTCCAAGAGTCAGCGTTGATTTGGACTTCTTGGAGGACGATGACATATTGGGGGGATCGCCAGGAGGAGACAATGGAAGTAATGGTGTTGGGACAAATCATGAGCCCTGTGACATTTTGCAGCAGAGCTTGGCGGAGGCTAACATCACAGAGCAGAGCCTTCAAGAGGCAGATGCTGAGCTTGACCTCAGTTCCTTTGGGCTAACTGGCCTTACGCAGGTGGTTCAACCCCTGCCTGATGCCGGCCTGTCTGGGGTGGGCATTGGAGGTGCAACTCAGATTTTTCCAAACCAAGGCACCCCTACCGCACCCTCAAATCCCACTCCAGACATGCTTGGTTCTGTCCTGGCACATCCAGGTCTGCAGCTTCAACAACAGGTCATGAACAAGGCTATCAGCGTCCAGCCTTTTGTACAACAAGTCGGACTTGGAAATGTAACACTTCAGCCAATTTCGAGCCTTCAGGCCCTACCGAACGGCAGCCAGTCTGGACCGTTGGGCATTGGACAAATTCAAGTGGTGGGTCAGCCCACTGTAATGACTATAAATCCATCTGGGCAGCAAATCTTGACGAAAACCATGGGTGGCTACCAACTGCATCAACCTGGGCCGGAGGCAGCAAGCGCTGGAACGCAGGCTGGGCTTGGAAGCTCTGTTTTGAGTTCAGGAGGTGGACTTGTAATTCAAGGGGGCAAGGCCACTCTCGGGTCCCCTGCCTTAAATGGGCCAGCTGTCTGCTTAGGCAGCACAAATACCAACAACAGTGCAACTACAATGGCCACTGCTGGTGGTATAGTGGGTTTTAGTAATGCCTCTTTGGGTGCAGGAATTGGATCTCAGACCCAGCCTCAAGGCCAAATCATGCAGAATGTCATCATCCAGCGAACGCCAACGCCAATACAGCCCAAACCTCCTCAAGGGGGTACAATCCAACCCAAAATCttcaagcaacaacaacaacagcttcCTGCCCCACATGCCTTGCCAAATGATGCTAATAAAGCTCTGGGGGTACAGCAAATCCCAGTGTCAGCTGGTCAGAATGTAACGTTCCTCACCGGGAAGCCTGGCTCTAACGTAGTTTTGAGCACACAGGCAGCGTCGCAGGGAACACAGTTTTCTCAAGCGCTCTTTAAACAGCAGGGCCCTCAAACTTCAGGCAAACCCCTCAGTGTTCACTTGTTAAACCAACAGGGCAGCATTGTCATTCCCTCGCAAACTGTCCTGCAGGGCCAAAACCACCAGTTCCTCTTACCAGGGCTTCAAGCAGGAGGCCAGATCCTGGCTCAGCATCCTGGTGGACACATCATAACCAGTCAGGGGCCTGGAGGGCAGATAATCGCTAATCAGAtcttgacagccaatcagaacatcaACTTGGGACAGGTGTTGGCTTCACAGGGCCACCCTGGTGCAGCCCACATTCTCTCTGGACACATCCAGCTCCAGCCTGGTCAGATGGGTCAGCCTGCACTGTTCCAAATGCCGGTGTCTTTGGCGCATACTCAGACACAATCTCATCCGGTAACCGGGCATGTACAAACGGTCATTCAGGGCATGCCTATACAGAATTCCCTGTCTGTGGAGAGCCTTAGCCCAGCAGTCAGTTTACAGACGTTGCAGCAGTCTGGCGGCGTCCCTAATAATGGTAGCAGTGGATCGACGGCAATGGCGCCATGCCAGCCAGGAGAGGGTATCACTGTATTGGGCGGCTCTTCTGACTCTGCTGCTCAACCAGCACAGACGCAACCTCAGCCCTCAATTCTCACGGTTCAGACGACGCCTCCAGTTTCAGTAGCAGCTTCGGTTCCTTCCTCTTCATCTCCATCCCCAACGATGGCCACGTCTGCATCCACAATGGTGGGTCTGTGTTCACAGGCCCAGCACAGCCCTGGAAAAGTGTTGTTCACGTCACCTGGTTCCGGCATGATCCTGAGCCAGGAGCCTCTTCAAATGTTCCTGCACCAGGTTCCATCGTCAGCACATTCACAGTCTATAAAGATCCAAAACGCCTCCCAATCTCAGCCTGTGGTCACCCCTTCGCCAGCACCCACACTGTCCGACAGCCCTCAACCTGCTCAAGTTTCCCCTCTCACTCTCGGGCAGCAGATCCAGTCTCCCCATCAACAGTCTCGGCCTCCCTCGCAGCCCCAGCCTCCTTCACAGGCACAGACTCCTTCACGCTCATGCACCCCTTCCTCTCTACCGCCTCTCTTCATCATTCACAATCAGATGGGAGGTTCTCCACAGCCGGCTCCACCACCTCAGCAACAGCAGCCTCAGCAGTTACAAGTGCAGCTCCAGCCTCAAGTTCTTCCTCAGCCTGCTGCTCTGCAGCCAGACGTACCTCCTTCCTCGTGCTCCCCAAAGCCTCCGCAGCCACTTCCCACACAGTTCCAGTTCCAGCCCCCAGTCTCCAGCTCGTCTCCAGCTGCAGCAGTGAAACAGCAGGTGACGGTGGTGCCTGGGCTGACCGCAGAACAGCAGCATCACCTACAGCTGGTCAGTGCGCAGCTGCAGACCATGTCATCAATCACACAGCCCTCCCCTCAACAAAAGCAGCTCTTGGAAAAACTTCACCAGGTCCAGCAAAACATACTTTTGCAGGCTAAGCAGCAAGCTCAGGCACAAGCCCAGGCCTCTCAGCAACAGGCTACAAACCAGTTCAACAAAATGCCAGATCAGCCTTCGGTCCAAGCTGCGACTTCTTCAACGGCCACTGGAGCCATCCAAGCACCAGTCCAGTCTCTTCTGCCGCAGAAGTCTGTGCTTGTCAAGCCCTCTACTACAGGTGCAAATGACACACAAGTGTTTTCTGCGGTGTCTGCTGGGGCTACGGTGAACACGGGAATCACAACACCAAACCTTGCACAGGCTGTCCAGGCAAAGCCAGGCGTCATAAGTTCGGTTAGTGGACTAACTCTGGGCAAAGCAGGTTTGCAGATTCAGGTGTTAGGTGCTGGACTCTCTCAAATGCCTGCACCTCCACTACCTGCTCCCCAAACACAGacatcAACATTAAAAAGGCCCTTTAGTATGGAACCAAGCAAAGAAGCTAGGATGCTGGAACAGCTGCGAAAACAGCAAGGCTCAGTTCTCCATCCTGACTACAGCTCTCCTTTCCGCTCTTTTGAGGACACACTTCATCGGCTGCTGCCATACCATCTGTACCAAGGCACGGCTTCATCTCCGGAAGACTGTCGTAAAGTGGATGATGAATTTGAGAACGTCTCAAGCCAGCTCTTGAAACGCACACAAGCAATGCTGGATAAATATCGTCACTTGCTTTTCGAGGAATCAAAGCAGAGGCTGGGTCCCTCAGCAGAGATGGTTATGATTGACCGGATGTTCATTCAAGAGGAAAAGGTTGCTCTGAGTCAGGACAGGGTCCTAGCCAAGGAGAAACCAGAGGAATTTGTGGCCAATTCGTGTTTAGTGGACAGCAGTGCGGTGAAGCTTGAAAAGGTGGAGCTAAGTTCTGTAAGAACTGCATCAACAATGGTTGCGGCTCCGCCTACAGCAGTTACGCCTGCTCCTGCCACAACTGTTGCCCCGGCTCCAACCTCTACACCTGCTCCAGCTGCTGCCCCAACTCCTGCTCCTGCTCCTGCCCCTGCACTCTTCCCTCCAACAAAACTGGTGATCAAGCAAGGTGGAGGAGGAGCTTCAGTCTCCTGGTCCACCAGCTCAACCCCTACGCCTGCTCCGGTGGTGCGACCGCCTGCTGAGCCTGTCGCACCAAGTGCCTCCTTCAGCCGCACTCCGTCCTCCCGCCCTGCTGACGACGACGATGACGTTGCACTTCCCCAACGGACCAGCAAACCACCCATCAAGACCTACGAGGCACGTCGGCGGATAGGTTTGAAGCTGAAGATCAAGCAAGAGGCGGGGTTAAGTAAGGTGGTTCACAACACTGCATTAGATCCTGTCCATTCGCAATCACAACTCACACCACAGACGCCCACCCCCGAGCAGCCGCAGAAAGTAAAGCCACACGTAACTCTTCCCTCCACCGTCATTAGAACTCAACCCACAACCTCTCAATCCACCTCCTCCTCCACTGTCACCACAGTAACCACACACACAGCCTCCGCCTCCAGTAGCGCAACTTCCTCGAGCGGGGCATCGTCTTCATTCTCCACCTGGTCTTCATCGTCACCTTCTACGTCGACCGCGCAGATGAACGGCACCCTGGAGCACCATGAGGTAGGTGGGGTCAAACGTAACCCAGCGTCCACAGCAACGCCACCACTAACAACGTGCAGGCTCCCGCTCCGAAAGACATACCGTGAGAACATCAGTCCCCGTCACAGGCCTGGAGTACCAGGAGGTGGTGGAGATACACTACCCATTCTGCCTGCAGGACCTCCTGTTACCTCTTCGCCCCAACCGCAAAGCTCGTCCCCTCAACCCGAACGAACTGTGATAGCCAGTGTGAAACTGGAGCGGCAAGGTGGACACGGGCGATCTCACCCCCATGCGGAGTCACAAAGCCTGGCAGCCGTTGAAGACGTCCTTTATCGGGGAATAAAAAACGCGTACCAACATCATCGGGAGTTTGATAAAGACGATGAGGATGATATGGAGgaaggtggtggtggtggtggtgcttTGGGGCGGTTAAAGGGCATAGGAAGCAAACACCGGGAAGGGGGACGGGGCGCCTTCAGGATGGATCAGCATGCCCCAGGGCCGCCCTCTCCCGGAGAGTCTTCCTGCACAAGAGACTCGTCACTTCCTGCCAAACGCTGCAAGTCGGACTCTCCGGACATGGACAATGCAAGCTTCTCCAGCGGCAGCCCGCCGCCTGACGACTCGCTAAATGAGCACCTGCAGTGTGCCATAGACAGTATACTAAACCTCCAACAGGGCCCTCCTGGACACGGAGGCTCAGGGAGAGGGGATTTAGGGAGGGTTCATGGGGCAAACCTGCCTAACCAGCACCAAACCCATCCCTCCTACAGACAGTCCATGCCTCCCCTCTCAACACAGCCCTCGTCCGCCCCCATGTCCCAGCATTCACAGGTAGGAGGGCGAGGGCAGAATGGAAATCTGGTTTCACAGACGCACAGTAGATAACAGCCCCTTCAGCCCACGTCGACTGAAAGACTGAAAAAGCAGGATGTCAGTGCATAGGGGGAAGAAAATGGAGACATTTTCCCATGTTCAGCTGTGTTTGCTTTGTTTGTCTGTGGTTCGTGCTGATCAAACGTGTTCTTTTGGTTTACATATGGCCCTTTAAGTGTACTTTCTAAGTATAAAAAGTGCACTTTGATATGATTTTCAGATTTTTGTCACTTTTTATTTCCATCCTGGGTGCGAAGCTAGGCCAGTTCCAACGTCCATATCCCAGTTATTTTAGTTCTTCTCAAATTGTGAGAAGACATGACCTTTCATTTAATTAGTAATGTTTGTAATAATCACAGTGACGGATGCAGATTGCAGGAACTTTAAGTGATATCATGAATTTGTCATATCAAACAGTTATTTTAGAGAGACCAATGGATCCCTTTGTTAAAATGGTCCCCtatattatgatttattgatCATTATGGATCATAGCATTATAGTGTAGCGCCCTGAAAGCATGATTTGTTGTCTTTGGTTGTTTGACTAAAGGAATTAACAATGATGCATTCACAAGTAGACAAATCACCCAAACTCTAGGAAATCCGTTGACCTTTAAAGCATTCCAGTATCAAGAGCACATTTACAAATCAAACTTACAATCATAGCGCAGCAAATTTGGGTCGCCCTTATAATagatgatttcttttttcttcgtGAGAACAGCCATTTTTCATCTCTGAAGTGCAGAGTGCGATATCCctcatttatgttttgtttttgcatatgTATGTGCAGACACTCGTTCAAATTTAAGATAGGATCACTGAAAGACTTGGAACCATTCAGAAGCAAACACAGCGAAAAGCAATGACACAGAcgaaaagaacaataataatgtaaagagaaaaaagaaaatagaactGTAAGAATTTGAAGTATAGTACTACAGAttaattttgtattgtatttattgtgtataatgacactttttaaaaaactgtacatttagtaaaactgtaaattaaacCTTGCTTCTTTTATGAAACAACCCCATTTGTTTTTGATTGCCGTTGGACTTGATTGTTTTTGACTGGATTGACTGTAGAGTTGATGTCAAATTTATTATCCCTCCTGTAAAAttgttattctttttaaaatatttcctaagtgatgtCAAATGGTGctaaggacatttttacagtattttcaacAAATAATCTCAAAGCaaatcataactttttgatttagtggcttatccgtatgaattcgtacaatctcatttgtacgatttgcttatctcccaatgacggttgggtgtAGAGGTGGGGTTGTGTGCCAAtgccacctttaaaaaaaatcgtacatttttgtacaattgAACTCGaactacgaattagccactaatctgacaaaacgtaaaatagttgcgtttccttgtgaaatcaggctggtatttccatatatatattttgatattattatatatttatataagtggcgcagtaggtagtgctgtcgcctcacagcaagaacgtcgctggttcgagcctcggctcagttgacgtttctgtgtggagtttgcatgttctccctgcgttcgcgtgggtttcctccgggtgctccggtttcccccacagtctaaagacatgtggtacaggtgaattgggtaggctaaattgtccgtagtgcatgagtgtgtgtgtgtgaatgtctgtgtggatgtttcccaaggatgggttgcggccggaagggcatccgctgtgtaaaaacttgctagatacgttggtggttcattctgttgtggcgaccccgagTTAATAAAGGGATAATAAGCCGACAAGTTTatgagatatatttatttatttattttttctagagaaagtattttttgtttgttttagttgagaaataactaaactaaataaaaataacccTTAAGAAATTTTACAAATTAAACTACTGTTGtccaacgacttgcctaattaacctaacttgcactatcaatttgtgttgggataacatgaaggcaTTAACTTAACCGttttgttcaattcacttaaatttgtaaaaactactaagttattgcaaaaaaaaccctcaagaattttgtttttttcagctcattttaaacaattagcaaacgtcatttttgagtgaactatcttgcaaaataacgaAAAATTTGTAAGTACTATCATCATGCCAAACACTAAAGAACTACTTACTTTGACCGTCTGTTCAACTCCATTGTGAAGTCAGTAATGTTGTACAGAGTTGAAACCTGGAGGATAACCAAAACCACAACCCGAAGAATCCAGATGTTCATCAACACCTGGTTTAGAAAGATTCTTCACATTCGATGGCCCGACACGATCAGTAACATCGATCGATGGGGAAGGACCTGTCAACCTCCAATATAAACAAAATCACAGAAATCTGGAAGAGAAGACGGGATTGGATAGGGCACACCCTACGCAAACCACCAACTAGTCAAGCTCTCAGAACCCTTAAGGGAAGCGGAAGAGACCCTGTCCATAATACCTGGCGACGCAACCTCAAGGCAGACATCGCAGAGATGGGTTACATCTGGAGACAAGTAGAAAGAATGGCCCTGGACAGAAACCTCTGGAGATCGACCTTTGGTGGCCCATACTCTGAAAGGGGTGGTGGGTATAAGTAGGTAAaagttgtcacaacacaaattattAAGTTAAAGTGTTTTTACACATAtatgtagattgaacataaaacaattacgttgtccAAAAAACTCAGAatggtgttgtttcagcttattttaaataagtagtttgaatgaaCATCAAAcgtaattttttgagtgaactatcttgcaaaataaccaaaaaattgtatgtactatcatcatggtAAAGACTAAAGAACTTACTTTGACCACCAAGACCTGTCTGTTCAACTCCATAGTGAAGTCAGTAATGTTGTGGGGTTGAAACCCGAAGGATAACCAAAACCATCACCCTAGGAATCCAGACGTTCATCAACACCTATCTCAAAAAGATTCTCTTCATTTGCTGGCCCGAAAAGATCAGAATCACCGACCTAAAGGGAAGGACCTGTCATCCTCCAATAGAAGCAGAAATCTGGAAGAGAAGAAGATGGGATTGGATAGGGCAAACCACCAACTAGCATCACCAGACAGGCTCTCAGATGGAACCCCTAAGGGACGCGGAAGAGAGGCCGTCCAAGAAACTCCCACTGATGCGTCCTCGAGGCAGACATCACAAAGATGGTTTACATCTGGAGACAAGTAGAAAGAATGTCCTCTGAGGATCGACCTTTGGTGGCCCATTCCCTGGAAGGGGTGGAGGGCATTAGTAAGTAAACGATGCAACATAAccccttcatgttgtcacaacacaaaacaattaggttgccccccccccccccttaataATGGtgtataaaaatgttaaacacaCATGGGAAATACTTGTATGTAACAACCAGTTTTGAAAGTTGCTagtgacttcatctgtatatgtaATGATCTATCCGGCCAGCAGATGGCATTGGTTAATCAGCTATGCCTCAGAGAGCCACAAGAGTTGACCTGCCAAGCCTCTCCAATGTGTTCTGTCATGCCAGCATCAGTAGTCACATGCGCATCTGTTCTACAAACAGTTCAAACAAAAGCCAAACAAACCATAACACAATACACATTTCCCCAATGCTACACTCTCTGCTGACAGACGAGCAGTGCCACGCCCTCACTTTTGCAGGCAGCACTTTATGGAAATCAATGACTCTTTCTAAAAACGCTTGACTCCACCTTTTGCATTGATGCGCCCCCCTTTACTCCCTCGTCCCCACCCTGGTTTAAACCCATTGTCATCACTCGCCTAAAAGCAAGCAGCCGTCCCAGGCTCTCCCCTGCTCCTGCGTCAGGCAGTATTTGAAGAGGTGTAGGCAGGGAAAGGAGGCAGTACTTGTGGGCTTGCCTCAGAGCTGATTttgctgcaagaaatagaagatCAGAGCAAGATCTTGGAACGCTTTAGAACTTGAAACTTTTTACTTGGTGCTATACTTTGGACAAAAAGCGTTCCTTCTAAGGTACATCCTTGAATGGCAAAACGTCCCAGCTGGAGAAAGTGGTTCAGATTCATCCTCATTTGAAGTTCTTCGACGTTCTCAAG

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0016514 SWI/SNF complex cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031116-2 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be part of SWI/SNF complex. Is expressed in several structures, including hindbrain neural plate; intermediate cell mass of mesoderm; midbrain neural keel; nervous system; and presumptive telencephalon. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome. Orthologous to human BICRA (BRD4 interacting chromatin remodeling complex associated protein).

Ensembl:

ensembl_id ENSDART00000098540

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027163 lncRNA upstream 37798 44591207 ~ 44592617 (+) True XLOC_013039
TCONS_00026932 lncRNA upstream 589913 44034233 ~ 44040502 (+) False XLOC_013033
TCONS_00025909 lncRNA upstream 589913 44035717 ~ 44040502 (+) True XLOC_013033
TCONS_00026931 lncRNA upstream 593953 44028378 ~ 44036462 (+) False XLOC_013033
TCONS_00027162 lncRNA upstream 899931 43639080 ~ 43730484 (+) True XLOC_013030
TCONS_00025933 lncRNA downstream 145797 44795892 ~ 44801995 (+) False XLOC_013045
TCONS_00025936 lncRNA downstream 206538 44856633 ~ 44863333 (+) True XLOC_013046
TCONS_00025937 lncRNA downstream 285078 44935173 ~ 44980093 (+) False XLOC_013047
TCONS_00025938 lncRNA downstream 285096 44935191 ~ 44948995 (+) False XLOC_013047
TCONS_00027164 lncRNA downstream 285096 44935191 ~ 44950124 (+) True XLOC_013047
TCONS_00025918 mRNA upstream 40323 44567191 ~ 44590092 (+) True XLOC_013038
TCONS_00025917 mRNA upstream 40630 44566863 ~ 44589785 (+) False XLOC_013038
TCONS_00025916 mRNA upstream 64227 44532883 ~ 44566188 (+) True XLOC_013037
TCONS_00025914 mRNA upstream 65663 44532370 ~ 44564752 (+) False XLOC_013037
TCONS_00025913 mRNA upstream 87118 44532199 ~ 44543297 (+) False XLOC_013037
TCONS_00025922 mRNA downstream 23895 44673990 ~ 44696815 (+) True XLOC_013041
TCONS_00025923 mRNA downstream 53248 44703343 ~ 44709050 (+) True XLOC_013042
TCONS_00025924 mRNA downstream 96499 44746594 ~ 44765515 (+) False XLOC_013043
TCONS_00025925 mRNA downstream 100075 44750170 ~ 44755708 (+) False XLOC_013043
TCONS_00025926 mRNA downstream 100080 44750175 ~ 44765515 (+) True XLOC_013043
TCONS_00025912 other upstream 476144 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025911 other upstream 511153 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025908 other upstream 623727 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025902 other upstream 1404709 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025900 other upstream 1851652 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025934 other downstream 165412 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025939 other downstream 400740 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025943 other downstream 608886 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00025947 other downstream 876388 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025985 other downstream 1926926 46577021 ~ 46577139 (+) True XLOC_013073

Expression Profile

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