RNA id: TCONS_00025924


Basic Information

Item Value
RNA id TCONS_00025924
length 1843
RNA type mRNA
GC content 0.47
exon number 19
gene id XLOC_013043
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44746594 ~ 44765515 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTCCACTGGGCGAACCAAATCCAGGAGAATGTCAGAGAGGGAGGGACTGAGGGCAGACTCCACCCACTTCACTTTAGCAGGAGCTCCGTTTCGGATCTTGGGAGGCTCCATCCACTATTTTCGGGTGCCCAGGGCCCACTGGAGAGATCGGCTGCTGAAACTGAAGGCTTGTGGTCTCAACACTCTCACCACGTATGTGCCGTGGAATCTTCATGAACCGGAAAGAGGAGTTTATGTGTTTCAGGATCAGCTGGATCTGGAGGCGTACATTCGTCTAGCAGCTGAATTAGATCTGTGGGTTATTCTGCGTCCTGGGCCGTACATTTGTGCAGAATGGGATTTGGGTGGTTTACCAAGCTGGCTGCTGcaggacaagaaaatgaaattaagGACGACTTACTCGGGTTTCACAAGTGCTGTGAACTCCTTCTTTGATAAGCTCATTCCGAGAATCACACCACTCCAGTATAAAAAAGGAGGCCCTATTATTGCAGTTCAAGTAGAGAATGAATATGGTTCATATGCAAAGGACGAGCAGTACCTGTCAGTCGTCAAAGAGGCATTAATGTCCCGGGGAATCTCAGAGCTTCTCATGACATCAGATAACCGAGAAGGGTTAAAATGTGGAGGCGTGGATGGAGTCTTGCAGACCGTGAACCTACAGAAACTGTCTTACGGTGATGTGCAGCATTTGGCAGAACTGCAGCCACAGAAGCCGCTGATGGTGATGGAGTATTGGTCTGGCTGGTTTGATGTCTGGGGAGAACTGCATCATGTTTTCTCTGCGCAAGAAATGATCTCCATAGTTCGAGAGCTTCTGGATCGCGGCGTCTCCATCAATTTTTACATGTTTCATGGAGGGAGCAGCTTTGGATTTATGAGCGGAGCAGTTGATTTGGGCACCTACAAACCACAGACAAGCAGCTATGATTATGATGCTCCACTGACAGAAAGCGGCGATTATACAACAAAGTATCATCTCTTGAGGAGTCTGCTGAGCTCCTACAGCAAAGAGCCGATATTAGAGCCGCCGGCTGTGCAGAGCAGAAGAGTGTATGAGCCGGTGGTTGTTACTCAGCACATTTCACTATGGGAGAGTCTTCAGTGTGTAGAAACAAGTTTCAGAGCTGATGATCCTGTCAGTATGGAGAATCTTCCGGCGAACAACAATAATGGTCAGTCCTATGGATACACACTCTATCAGACGGACATTTATTCAGGTGGAGAACTGAACTCAAGAAATCATGTTCGTGACAGAGCTCTAGTGTTTATTGACAGAGAACTCATCGGCGTTTTGGACTACAGAACTCAGAAAGTTAAAATACCTCAGAGTAAGAGTGAAAGGACCTTAAGTTTGCTGGTTGAAAACTGTGGACGAGTAAATTATGGTCCAGCCCTTGACAGCCAGCAGAAAGGCCTTGTTGGAGATATAACTCTGGAAAATGTACCTCTGAAAAAATTCACCATGCACTGTTTGGACATGAAGCCGGGGTTCATAAACAGACTGCAGTCTCGGAAATGGACATCTGTCAGTGAGAAGCCCACCTATCCTGCGTTTTTCAGAGGATCTCTTGTAGTGGATCAACCCACAGACACATTTATAAAGCTTCCAAATTGGAGTAAAGGAGTGGTTTTTGTGAATGGGCAAAATCTTGGACGCCATTGGTCGGTTGGTCCTCAGAAAGCGCTATATCTACCCGGACCCTGGCTCAAGACTGGAGAAAATGAGATTATTGTTTTTGAGGAATTCAAAGCTACGGAAACAATCCATTTTGCCGAAAATCCAGAGTTTGGCAAGACAATCGACGTTTCTACACAGCTGTTTTGCACCCTGATGTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0044782 cilium organization biological_process
GO:0060271 cilium assembly biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005773 vacuole cellular_component
GO:0097546 ciliary base cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004565 beta-galactosidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-59 Predicted to enable beta-galactosidase activity. Acts upstream of or within cilium assembly. Located in ciliary base. Orthologous to several human genes including GLB1L2 (galactosidase beta 1 like 2).

Ensembl:

ensembl_id ENSDART00000139690

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027163 lncRNA upstream 153977 44591207 ~ 44592617 (+) True XLOC_013039
TCONS_00026932 lncRNA upstream 706092 44034233 ~ 44040502 (+) False XLOC_013033
TCONS_00025909 lncRNA upstream 706092 44035717 ~ 44040502 (+) True XLOC_013033
TCONS_00026931 lncRNA upstream 710132 44028378 ~ 44036462 (+) False XLOC_013033
TCONS_00027162 lncRNA upstream 1016110 43639080 ~ 43730484 (+) True XLOC_013030
TCONS_00025933 lncRNA downstream 30377 44795892 ~ 44801995 (+) False XLOC_013045
TCONS_00025936 lncRNA downstream 91118 44856633 ~ 44863333 (+) True XLOC_013046
TCONS_00025937 lncRNA downstream 169658 44935173 ~ 44980093 (+) False XLOC_013047
TCONS_00025938 lncRNA downstream 169676 44935191 ~ 44948995 (+) False XLOC_013047
TCONS_00027164 lncRNA downstream 169676 44935191 ~ 44950124 (+) True XLOC_013047
TCONS_00025923 mRNA upstream 37544 44703343 ~ 44709050 (+) True XLOC_013042
TCONS_00025922 mRNA upstream 49779 44673990 ~ 44696815 (+) True XLOC_013041
TCONS_00025921 mRNA upstream 83350 44649804 ~ 44663244 (+) True XLOC_013040
TCONS_00025919 mRNA upstream 96499 44630415 ~ 44650095 (+) False XLOC_013040
TCONS_00025920 mRNA upstream 99626 44631789 ~ 44646968 (+) False XLOC_013040
TCONS_00025927 mRNA downstream 3314 44768829 ~ 44791891 (+) False XLOC_013044
TCONS_00025928 mRNA downstream 3512 44769027 ~ 44779199 (+) False XLOC_013044
TCONS_00025929 mRNA downstream 3696 44769211 ~ 44794015 (+) True XLOC_013044
TCONS_00025930 mRNA downstream 30196 44795711 ~ 44820068 (+) False XLOC_013045
TCONS_00025931 mRNA downstream 30196 44795711 ~ 44820190 (+) False XLOC_013045
TCONS_00025912 other upstream 592323 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025911 other upstream 627332 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025908 other upstream 739906 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025902 other upstream 1520888 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025900 other upstream 1967831 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025934 other downstream 49992 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025939 other downstream 285320 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025943 other downstream 493466 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00025947 other downstream 760968 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025985 other downstream 1811506 46577021 ~ 46577139 (+) True XLOC_013073

Expression Profile

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