RNA id: TCONS_00025928


Basic Information

Item Value
RNA id TCONS_00025928
length 957
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_013044
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44768829 ~ 44794015 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGTACAGTGTTTCCCTGACCTTAAACCAGGCTACAACAAGAACACACATGACAGCGCGTAGAAACATGACCGCCGTCTCGAGATTTGTCAAGTAACTGTACTGAAAAGTGCATTTGGAGCTTAGCGTCATTATAAGTATGTGgctgttttgttaattttacgCCTTTTTTATCGTCGGACAGGTCTCTAACAGGACAGGTGGGCGTCAGGTCGCAGAGCACCGTCGCGATGGACATATCCATGTATTTAGGCTGCTCTCTGGGAGCTGCTCTTGGAGGTGTGATCTTTGCATCCTATAAACTGGGCTTACTTTACCAGCTCTTTCATAAGacagagagacagagtcCTCGACATGGAGGAGAGAGTGTGGCAGAGGTTTTGCGTTCTCACGGTGTCAAATTCGTCTTCACTTTGGTGGGAGGACACATCTCGCCCATCCTGGTGGCCTGTGAGAAGCTAGGCATCCGCATCGTCGACACCCGCCACGAGGCCACAGCTGTGTTTGCTGCTGATGCCGTAGCGAGACTTTCTGGTACAGTTGGAGTGGCTGCGGTGACAGCAGGCCCGGGTTTGACCAACACAGTGACCGCAGTAAAGAACGCTCAGATGGCTGAATCACCTCTGCTTCTGATTGGTGGAGCTGCTGCGACTCTCCTGCAGGGTAGAGGTGCACTCCAGGATATCGACCAGATGTCTCTCTTCAAGCCTCTCTGTAAGTTCTGTGCATCAGTGAGGACTGTGAGAGAAATAGTTCCCACTGTTAGAAAAGCCCTGGCCATCGCACAGTCTGGAACACCAGGCCCAGTGTTTATAGAGTTTCCCATAGACACACTGTACCCGTATCATGTGGTGGAAAAAGAGTTTGCCCCCAAAAACACTCCCAAAGGCCTGATGGGGAAAATCATTGCATGGTATCTCAAAAATCATTTATCAAACTTATTTGCTGGAGCCTGGG

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0009097 isoleucine biosynthetic process biological_process
GO:0009099 valine biosynthetic process biological_process
GO:0001561 fatty acid alpha-oxidation biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005948 acetolactate synthase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003984 acetolactate synthase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1623 Predicted to enable acetolactate synthase activity and flavin adenine dinucleotide binding activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of acetolactate synthase complex. Orthologous to human ILVBL (ilvB acetolactate synthase like).

Ensembl:

ensembl_id ENSDART00000145190

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027163 lncRNA upstream 176410 44591207 ~ 44592617 (+) True XLOC_013039
TCONS_00026932 lncRNA upstream 728525 44034233 ~ 44040502 (+) False XLOC_013033
TCONS_00025909 lncRNA upstream 728525 44035717 ~ 44040502 (+) True XLOC_013033
TCONS_00026931 lncRNA upstream 732565 44028378 ~ 44036462 (+) False XLOC_013033
TCONS_00027162 lncRNA upstream 1038543 43639080 ~ 43730484 (+) True XLOC_013030
TCONS_00025933 lncRNA downstream 16693 44795892 ~ 44801995 (+) False XLOC_013045
TCONS_00025936 lncRNA downstream 77434 44856633 ~ 44863333 (+) True XLOC_013046
TCONS_00025937 lncRNA downstream 155974 44935173 ~ 44980093 (+) False XLOC_013047
TCONS_00025938 lncRNA downstream 155992 44935191 ~ 44948995 (+) False XLOC_013047
TCONS_00027164 lncRNA downstream 155992 44935191 ~ 44950124 (+) True XLOC_013047
TCONS_00025924 mRNA upstream 3512 44746594 ~ 44765515 (+) False XLOC_013043
TCONS_00025926 mRNA upstream 3512 44750175 ~ 44765515 (+) True XLOC_013043
TCONS_00025925 mRNA upstream 13319 44750170 ~ 44755708 (+) False XLOC_013043
TCONS_00025923 mRNA upstream 59977 44703343 ~ 44709050 (+) True XLOC_013042
TCONS_00025922 mRNA upstream 72212 44673990 ~ 44696815 (+) True XLOC_013041
TCONS_00025930 mRNA downstream 16512 44795711 ~ 44820068 (+) False XLOC_013045
TCONS_00025931 mRNA downstream 16512 44795711 ~ 44820190 (+) False XLOC_013045
TCONS_00025932 mRNA downstream 16595 44795794 ~ 44820076 (+) False XLOC_013045
TCONS_00025935 mRNA downstream 70610 44849809 ~ 44874334 (+) False XLOC_013046
TCONS_00025940 mRNA downstream 335193 45114392 ~ 45264117 (+) False XLOC_013049
TCONS_00025912 other upstream 614756 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025911 other upstream 649765 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025908 other upstream 762339 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025902 other upstream 1543321 43181709 ~ 43225706 (+) False XLOC_013027
TCONS_00025900 other upstream 1990264 42773594 ~ 42778763 (+) False XLOC_013025
TCONS_00025934 other downstream 36308 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025939 other downstream 271636 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025943 other downstream 479782 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00025947 other downstream 747284 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025985 other downstream 1797822 46577021 ~ 46577139 (+) True XLOC_013073

Expression Profile

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