Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025934 |
| length | 779 |
| RNA type | processed_transcript |
| GC content | 0.45 |
| exon number | 4 |
| gene id | XLOC_013045 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 44795711 ~ 44820746 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030576 | Cajal body organization | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060810-6 | Predicted to act upstream of or within Cajal body organization. Predicted to be located in Cajal body. Orthologous to several human genes including FAM118B (family with sequence similarity 118 member B). |
| ensembl_id | ENSDART00000135882 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025933 | lncRNA | upstream | 13512 | 44795892 ~ 44801995 (+) | False | XLOC_013045 |
| TCONS_00027163 | lncRNA | upstream | 222890 | 44591207 ~ 44592617 (+) | True | XLOC_013039 |
| TCONS_00026932 | lncRNA | upstream | 775005 | 44034233 ~ 44040502 (+) | False | XLOC_013033 |
| TCONS_00025909 | lncRNA | upstream | 775005 | 44035717 ~ 44040502 (+) | True | XLOC_013033 |
| TCONS_00026931 | lncRNA | upstream | 779045 | 44028378 ~ 44036462 (+) | False | XLOC_013033 |
| TCONS_00025936 | lncRNA | downstream | 35887 | 44856633 ~ 44863333 (+) | True | XLOC_013046 |
| TCONS_00025937 | lncRNA | downstream | 114427 | 44935173 ~ 44980093 (+) | False | XLOC_013047 |
| TCONS_00025938 | lncRNA | downstream | 114445 | 44935191 ~ 44948995 (+) | False | XLOC_013047 |
| TCONS_00027164 | lncRNA | downstream | 114445 | 44935191 ~ 44950124 (+) | True | XLOC_013047 |
| TCONS_00025944 | lncRNA | downstream | 493222 | 45313968 ~ 45326757 (+) | False | XLOC_013051 |
| TCONS_00025929 | mRNA | upstream | 21492 | 44769211 ~ 44794015 (+) | True | XLOC_013044 |
| TCONS_00025927 | mRNA | upstream | 23616 | 44768829 ~ 44791891 (+) | False | XLOC_013044 |
| TCONS_00025928 | mRNA | upstream | 36308 | 44769027 ~ 44779199 (+) | False | XLOC_013044 |
| TCONS_00025924 | mRNA | upstream | 49992 | 44746594 ~ 44765515 (+) | False | XLOC_013043 |
| TCONS_00025926 | mRNA | upstream | 49992 | 44750175 ~ 44765515 (+) | True | XLOC_013043 |
| TCONS_00025935 | mRNA | downstream | 29063 | 44849809 ~ 44874334 (+) | False | XLOC_013046 |
| TCONS_00025940 | mRNA | downstream | 293646 | 45114392 ~ 45264117 (+) | False | XLOC_013049 |
| TCONS_00025941 | mRNA | downstream | 379297 | 45200043 ~ 45264117 (+) | False | XLOC_013049 |
| TCONS_00025942 | mRNA | downstream | 407945 | 45228691 ~ 45259876 (+) | True | XLOC_013049 |
| TCONS_00025945 | mRNA | downstream | 662536 | 45483282 ~ 45519748 (+) | False | XLOC_013053 |
| TCONS_00025912 | other | upstream | 661236 | 44153674 ~ 44154271 (+) | True | XLOC_013036 |
| TCONS_00025911 | other | upstream | 696245 | 44119137 ~ 44119262 (+) | True | XLOC_013035 |
| TCONS_00025908 | other | upstream | 808819 | 44006572 ~ 44006688 (+) | True | XLOC_013032 |
| TCONS_00025902 | other | upstream | 1589801 | 43181709 ~ 43225706 (+) | False | XLOC_013027 |
| TCONS_00025900 | other | upstream | 2036744 | 42773594 ~ 42778763 (+) | False | XLOC_013025 |
| TCONS_00025939 | other | downstream | 230089 | 45050835 ~ 45050950 (+) | True | XLOC_013048 |
| TCONS_00025943 | other | downstream | 438235 | 45258981 ~ 45259097 (+) | True | XLOC_013050 |
| TCONS_00025947 | other | downstream | 705737 | 45526483 ~ 45575178 (+) | False | XLOC_013054 |
| TCONS_00025985 | other | downstream | 1756275 | 46577021 ~ 46577139 (+) | True | XLOC_013073 |
| TCONS_00026000 | other | downstream | 3617751 | 48438497 ~ 48438613 (+) | True | XLOC_013089 |
