RNA id: TCONS_00025941


Basic Information

Item Value
RNA id TCONS_00025941
length 6919
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_013049
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 45114392 ~ 45264117 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGATGACATGAAGCAATTGTTtggaacctagcatttttttgcagtgatttTCTTGTAATATATGTTAGTCTTAAATGGGAGATGTATAAACCTGCTGTGGCACGTTGGGAAAGAGGTGGAGGGAAAAGTAGGAGGAGTTATTTTTTTCCTccttccctcacacacacacacacacatgaatcaACACAGGTAGAGAGCGGTGCAAAGTTTACTGCTAGTTCAAAATCTCATGTCCTGCATGCTGACTTTATTTGCTGTCAGAGCTTCGTCAAAGCGGCCGACAGAAAACATAGAAGAGAAGGAGAGCGAGATTCGGCCTTGGCGCTGAGCAGAGaAGAGAGGATGCTGCAGGAGACCAGTGTTCGAGTGAGTCCGACCTGATCGCTCCATCCCCTCCCCCCGCCGCTCCTCCACAATCCCAGGATGCTCTGCCCCTGTCGAGGGAAGCTGAAGTTGCTGGTGGTGTCTCTGAGTTTCGTCATCCTGTTCACCTGGCTTTACCTGCTCGTGGGGAACTCGGAAAACGGACGTTCGCTGCTCCTCTCTGCATGTTTGGTGGAGTCTACTGAAGCGCGGCTGCTGGAACGGGACGTCCTGGCATCACGGGTTCGTGAAGTGGAGGAGGAGAACCGCCAGATCCGTCTCCAACTCAGCCAATCGCAGGGTTTGGCCGGTCAGCCTGCAGAGGGGAACTATGGGAACCAGCAGTGGGTGGCATCGGCAGACACCGGTCCAGAGGATGTGGAGAACACAGCTGAGGAGCGGGCAAACCACAGCGAGTGCTCACGCTCGCCCACTGCTGAGAAGTGTGAGTTGCTCCACGtggcatgtgtgtgtgcaggtcacAACGCCAGTCGAGACGTGGTCACTCTGGTCAAATCTATCTTGTTCCACAGGAGAAACCCACTGCACTTTCATTTCATCACAGACACGGTGGCCAATCAAATCCTCAGCACTCTGTTCCAGTCATGGATGGTGCCGTCGGTACAAGTCAGCTTCTATGATGCTGATGAACTCAAATCGGAGGTGTCGTGGATACCAAACAAACACTATTCAGGAATTTATGGCCTGATGAAGCTCACTCTCACCAAAGCTCTGCCATCCAACCTTTCGAAGGTCATCGTTCTCGATACGGACATCACCTTCGCCACAGACATCGCCGAGCTGTGGGCCATTTTCCGCAAGTTTACTGAGAAGCAGGTGATTGGTCTGGTGGAGAATCAGAGCGACTGGTACCTGGGCAATCTGTGGAAAAATCACAAACCCTGGCCAGCCCTGGGGCGAGGATTTAACACCGGTGTGATTTTACTGTACCTGGAGAGACTGCGGCGGATGGGCTGGGAACAGATGTGGAGACTGACAGCAGAGCGAGAGCTGATGAGCATGCTTTCCACATCCCTCGCAGATCAGGATATATTCAACGCTTTCATCAAACAGAACCCAGTGCTGGTGCATCAGCTTCCCTGTTTCTGGAACGTTCAGTTATCAGATCACACTCGCTCTGAACAGTGTTACACTGAAGTGTCCGATCTAAAGGTCATTCACTGGAACTCTCCTAAAAAGCTGAGGGTGAAAAACAAGCATGTGGAGTTTTTCCGGAATCTTTACTTGACGTTCCTGGAGTATGATGGGAATCTTCTGCGACGAGAGCTGTTCGGATGTCCCAGTCAAGCCAGCTCAGAGAGCACAGTGCTCCAGCAAGCTCTAGAGGAGTTAGATGAGGACGACCAGTGCTATGACTTCCGGAGGGAGCGGATCATGCTGCACAGGGTACACCTCTACTTTCTGCAGTACGAATACAGTCCTACAGACGATGGCACGGACATCACGCTGGTCGCTCAGCTCTCCATGGACAGACTGCAGATGCTGGAGGCCATCTGCAAACACTGGGAAGGCCCCATTAGTCTGGCTCTGTACATGTCAGACGCCGAGGCCCAGCAGTTTCTGCGGTATGCCCAGGCCTCCGAAGTCCTCAAAAACCGCAAGAATGTGGGCTATCACATCGTCTACAAGGAGGGTCAGTTCTACCCGGTCAACCTGGTGCGCAATGTGGCGCTTCGCAACGTCAACACACCCTACGTTTTTCTGACCGATGTTGACTTTCTGCCCATGTACGGCCTCTACGATTACCTCAGAAAAAGTATAGTCCAGCTGGATATGGCCAATACCAAGAAGGCTCTGGTTGTGCCTGCCTTTGAGACGTTGAGATATCGCCTTTCCTTCCCCAAATCCAAAGCAGAGCTGTTGTCAATGCTGGACATGGGGACTCTCTACACCTTCAGGTATCATGTCTGGACAAAGGGTCACGCGCCAACCAATTATGCCAAATGGAGAACAGCCACGACACCATACAAGGTGGAGTGGGAGGCGGATTTTGAGCCGTATGTTGTCGTGCGCAGAGACTGTCCCGAGTACGACCAGAGGTTTGTTGGCTTTGGCTGGAACAAAGTTTCCCATATCATGGAGCTCGATGCTCAGGAGTATGATCTTATTGTGTTACCAAATGCCTTCATGATCCACATGCCCCACGCGCCCAGCTTTGACATCTCCAAGTTTCGCTCCAGTCCGAGTTACCGCTACTGCTTGACTACACTAAAAGACGAATTCCACCAAGACCTTTCTCGAAAGTACGGATCCGCTGCTCTCAAGTACCTCACAGCACAGAGGAACATCTGAAAGCTCTCTTTCATGGACTTCAGCACACTGGAGAACGGCTTGGATTAGTCGATCAACCGAGGCTCAAAAATGCCCACACGCTGCTCTGCTACCACGTTTAGAGGTACGAAGCTGCCCTGCTAAAAACCAGAGCTTTaattcttcttttgtttttgatAAGTCATACAGCGGAGAACTGTGAAAACCAATGACATCAGCAGCAAATCCATCTCAAGACTGGTGGCGACCAAACATTTCAAGCGGACATCGGTGTATGTTTGTGATTACTCACTTTCTTATAGCCTAAAATGAACTTTTTTGTTGACAATCAGGGCTTTTTTTCTTCACTAAAGATCTACGGCTAGTGGTCCATGGCGCTGCGCAGCTTTGAAGCATTCGATGAGAAATGAACGAGCTTTCCAAAGACTCTTCTGCAGGACTGAAGGTTGAGGAGGCCATCAGGACGAGGGACTTTTAAAGCCTTATAATTTCCTtgatatttaaagtatttaatttttaacaacgACAAAGTGGTTTATGAACAACGACCTACAGCCTATATGTGTTTTACGATATACGACAgaaaatctgattatttttaaatttcaaactGCTGATTTGCTTGTAGTGAAAGAGGTCGATTTTGTCTGGTTATCGGATGTTGAAAATTCACGAGAAATGATCAGTGTGCAAAactcaacacaggctcattgtaaaaatgtaccccatatacatttctagagagcgtgAAATATGctgccagagctacgtatggctgcatttcatctttagaACGAACGCtagggggcggtatgacgccaccGACGACTTCTGTTTCTGTTTGCGCAACCAGCCGACCGCTtgcctccatgtggacggcttttccactgttaccagtttgcccagagGTTACCTGCACACTGCACTGTAATTGAGATGCAAAGAGGAATTGACCGGGACAACAGGGTCGAGtacggtgaagaatggttccaaaatccaggtaaaacaaaaggcaataTATAAAATAACCAAGTAAATACCAAGGTGAGGACGtagtaagatctgaaaacgtgttaaaaatcagacaagggctttgccttttctggactgcttttgaaaactctgtcggttgggttaaggggggTTTGTGGGGTTGGTGGGGTAGATGGCGGAgaggtgtcgcggacgaaagtgagcAGGCCAGGGTTGACGTGGACAAACGTGAAGAAGGTGAACAGCAGTtgggggaggagggcggttgaagAGGGGAATCTGTAAAAtaaggtgccggatcagatttcagaggtgctggatcTGGATTCGgcgtgttccagcacaaattaagccttgggtttagagaagttgtaattaggaggccatgatggacagatttGTAGGCAAAATTGGCCAGGTAGCTGGCATTTAACCACTATTCTTTTTCGATGGACATCCTGGGGTTTTTTAGtgaacacagagagtcaggacctcggtttaatgtcccACCTGAAAAACGGCACTCACTGAGTAGGATaaagtccccttcactatactggggcattaggacccacaaagaccacaggttgagcgtccgtttagggaaggggtgattgttcaatcagtgcttttaaagAACActttcagttgggtttagggaaggggtagTCAGGTCAATCTGTGTATTTGAAAATActattgcttgggtttagggaggagGTGATTGGGTCAAATTGTGTGTTCGAAaatactattagttgggtttagggaaggggtgattGGGTCAAACGGTGTATTTGAAAAAGCTGTCAAGTGAGTTTAGGAAAGGGGTGAGCGGACCAGTCGGTGTATTTGAAAACTTTATCGGTTGGGTTTGGGAaaggggtgattgggtcaatatgtgtatttgaaaacactattgattgggtttagggaagaggtgATTGGTTCAAACGGTGTATTTGAAAAtgctatcagttgggtttagggaaggggtgattgggtcaatcgcTGTATTTGAAAACTAtatcggttgggtttggggaggGGGTGATCAGGTCAATCAGTGTATTTAAAAACGCTATccattgggtttaggaaaggggtgaTTGTGTCAAACGGTATATTTAAAAACGCTATCGGTTGAATTTGGAGaaggggtgattgggtcaattgatgtatttgaaaacactatcggttcgGTATAAGGAAGGTGTGACCGGGTTGATCGGTGTATTTGAAAATACCATCAGTTGTGTTTAGAGTAGGGGATGGGCTGGGGGATTGGTCGGTCGTCGGTTGTTCAGtctgtcagtcgacagcggcctcctgtggatttacatgagaacagcaggcacgaaaaCGATGAGAGAAATTTCAGATCTGACAAATTGTACACAGGGCCCTCTAGtggaaagcaaaaactgcaaaaaaatggaCCCTCTGGGAATTATTttttgatctccagaaatgtatataggagtacgtatcaataatgagcccgggttggcaaAACTGCTGCATTTATTATTGTCACATAAAGCGAATCATGACATGCTTTAAcattcagacactttcctgcccTGAACtccctttttgttttgttttttcacttcAAAACATTTGCACTACATGCTAAAACACAACTGATTATATGATGCTTATATGTGCATTTGCATTGAGATCCACTCAAGGGACCATGAACAACTGGCGCATCCACTGAAGTTTCTCAAGGACTGAATATTTgtcagtgatttaaaaaaaaaacattcttccaATATTTATGGTGTAAAACGTCAAGTCACATTCTGGTCAAAAAGTTGAAATGATAATCCAGTGTCCAATTCTGCACTCACACAATAtgtatttgtatgttttaaaaaaagagagaggaatCTCGAAAGGTTTCATTGTACAAGTCGCTGCTGTTTCTCCAACGTGTCCCGTCTTTATAAAGTCTAACGCTCTTGCAGGTCATATTAAGTTCACTGTTCATACGCCACTCAAGCCCTTCCGTTCCATCAGACTGCAGATTTACGGTAAATACCCGTGCCTTTGCTGTGTTGCGAAAAACTGGATATTGATTGTACTACTGTACGCATCAGCGGGGCCTGCAAGAATACAGGTACTCTATTTATTATTGTTGACTTAAATCAATCATATTTTTCTATGTAGGGGACaaagtgctttaaataaattCTCCCTGTTTCTATAGTTTGTCTACGTTCTTTCATTGAAAATGAGTCACAGGATGTTTAGGCTGAAACTTTGAGTTTGTTCAGGAATCACTGCTGATTCATACTGAAGTTAGAAGGTCTAgaatgcacactgtaaaaaaatatctgttaattatcagtttccatattttgtgtgtCGCAAGtgtttatttacggttatgaattgcattataggacttTGATCTTTGCTCTGTCTTCTTCTGATGATGAAAACTCAagttcaacaaagtgacttttattgactttttagtaTGTATAAGTATGTATAGTAACAAAAAaggtactggcagtttattacaaggtttttgttgcATAACCAAGCGACAGCATCCAGATCTCCCTcatgaagccaatacggaagtaactgaaactgcaattcattgactcgcctttgggggctggctccaggacctccagatgttcactgactgcaatggtaaattggtcaattttacagctgataaaacatttttacaggtacaaaagatggttttgttGCATATAGCTAGTATTATcctttatgacaactgtgagaGGGGTGAGTTTtattataactcatctgtttagtttatattaagtctgcataattaagggtgtggccacttgagtgacagctaggtgtTGCTGCTCACGgtctcgtcacctcagctgattaaAGTTGATTTGCCGCTGATCTCGGCATATTCAtcatagttttgttttgtttacgtGACTTTACATAGTCATAATATGatacattatggatgtgacataaTTTCATACATAATATGACATGCTGTGTGCTCTTAAttatgctcacaaaccattcaagttgcctccatttaTGTAGTATACcggtattttatttaattttttaaaattttttctatgaataaaacttgtatcagggTTGCATTAATGTTTTGTTAGCTTGTCATGCTCTGAGAAAACAGTTGTTGACTAGCAATTTACATACACAATCCCTCCACCCCTTGCCCCACGATAATAATGTCATTTGTTAAAAAGTCCGCAGTgatttaaaagattttattt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0035269 protein O-linked mannosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0015020 glucuronosyltransferase activity molecular_function
GO:0042285 xylosyltransferase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-253 Predicted to enable glucuronosyltransferase activity and xylosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including brain; lens; mesoderm; pronephros; and shield. Orthologous to human LARGE2 (LARGE xylosyl- and glucuronyltransferase 2).

Ensembl:

ensembl_id ENSDART00000015786

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025937 lncRNA upstream 219950 44935173 ~ 44980093 (+) False XLOC_013047
TCONS_00027164 lncRNA upstream 249919 44935191 ~ 44950124 (+) True XLOC_013047
TCONS_00025938 lncRNA upstream 251048 44935191 ~ 44948995 (+) False XLOC_013047
TCONS_00025936 lncRNA upstream 336710 44856633 ~ 44863333 (+) True XLOC_013046
TCONS_00025933 lncRNA upstream 398048 44795892 ~ 44801995 (+) False XLOC_013045
TCONS_00025944 lncRNA downstream 49851 45313968 ~ 45326757 (+) False XLOC_013051
TCONS_00026933 lncRNA downstream 52361 45316478 ~ 45326709 (+) True XLOC_013051
TCONS_00026935 lncRNA downstream 192545 45456662 ~ 45478424 (+) False XLOC_013052
TCONS_00026934 lncRNA downstream 192545 45456662 ~ 45478424 (+) False XLOC_013052
TCONS_00026936 lncRNA downstream 204106 45468223 ~ 45478424 (+) True XLOC_013052
TCONS_00025935 mRNA upstream 325709 44849809 ~ 44874334 (+) False XLOC_013046
TCONS_00025931 mRNA upstream 379853 44795711 ~ 44820190 (+) False XLOC_013045
TCONS_00025932 mRNA upstream 379967 44795794 ~ 44820076 (+) False XLOC_013045
TCONS_00025930 mRNA upstream 379975 44795711 ~ 44820068 (+) False XLOC_013045
TCONS_00025929 mRNA upstream 406028 44769211 ~ 44794015 (+) True XLOC_013044
TCONS_00025945 mRNA downstream 219165 45483282 ~ 45519748 (+) False XLOC_013053
TCONS_00025946 mRNA downstream 240245 45504362 ~ 45517671 (+) True XLOC_013053
TCONS_00025948 mRNA downstream 262468 45526585 ~ 45569107 (+) False XLOC_013054
TCONS_00025949 mRNA downstream 278864 45542981 ~ 45561786 (+) False XLOC_013054
TCONS_00025950 mRNA downstream 286666 45550783 ~ 45569024 (+) False XLOC_013054
TCONS_00025939 other upstream 149093 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025934 other upstream 379297 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025912 other upstream 1045772 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025911 other upstream 1080781 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025908 other upstream 1193355 44006572 ~ 44006688 (+) True XLOC_013032
TCONS_00025947 other downstream 262366 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025985 other downstream 1312904 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00026000 other downstream 3174380 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00026002 other downstream 3277543 48541660 ~ 48553208 (+) True XLOC_013090
TCONS_00026020 other downstream 4147300 49411417 ~ 49447042 (+) True XLOC_013104

Expression Profile

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