Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00026934 |
| length | 834 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 11 |
| gene id | XLOC_013052 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 45456662 ~ 45478424 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0050877 | nervous system process | biological_process |
| GO:0009581 | detection of external stimulus | biological_process |
| GO:0009582 | detection of abiotic stimulus | biological_process |
| GO:0009583 | detection of light stimulus | biological_process |
| GO:0009314 | response to radiation | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0009628 | response to abiotic stimulus | biological_process |
| GO:0098655 | cation transmembrane transport | biological_process |
| GO:0098657 | import into cell | biological_process |
| GO:0104004 | cellular response to environmental stimulus | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0009416 | response to light stimulus | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0051606 | detection of stimulus | biological_process |
| GO:0071214 | cellular response to abiotic stimulus | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0071478 | cellular response to radiation | biological_process |
| GO:0071482 | cellular response to light stimulus | biological_process |
| GO:0097272 | ammonium homeostasis | biological_process |
| GO:0031226 | intrinsic component of plasma membrane | cellular_component |
| GO:0042995 | cell projection | cellular_component |
| GO:0001750 | photoreceptor outer segment | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0044441 | obsolete ciliary part | cellular_component |
| GO:0044459 | obsolete plasma membrane part | cellular_component |
| GO:0044463 | obsolete cell projection part | cellular_component |
| GO:0005834 | heterotrimeric G-protein complex | cellular_component |
| GO:0120025 | plasma membrane bounded cell projection | cellular_component |
| GO:0120038 | obsolete plasma membrane bounded cell projection part | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:1905360 | GTPase complex | cellular_component |
| GO:0071944 | cell periphery | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0097730 | non-motile cilium | cellular_component |
| GO:0097731 | 9+0 non-motile cilium | cellular_component |
| GO:0097733 | photoreceptor cell cilium | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025944 | lncRNA | upstream | 129905 | 45313968 ~ 45326757 (+) | False | XLOC_013051 |
| TCONS_00026933 | lncRNA | upstream | 129953 | 45316478 ~ 45326709 (+) | True | XLOC_013051 |
| TCONS_00025937 | lncRNA | upstream | 476569 | 44935173 ~ 44980093 (+) | False | XLOC_013047 |
| TCONS_00027164 | lncRNA | upstream | 506538 | 44935191 ~ 44950124 (+) | True | XLOC_013047 |
| TCONS_00025938 | lncRNA | upstream | 507667 | 44935191 ~ 44948995 (+) | False | XLOC_013047 |
| TCONS_00027165 | lncRNA | downstream | 195053 | 45673477 ~ 45675969 (+) | True | XLOC_013056 |
| TCONS_00026937 | lncRNA | downstream | 241864 | 45720288 ~ 45722866 (+) | True | XLOC_013058 |
| TCONS_00025961 | lncRNA | downstream | 285122 | 45763546 ~ 45768420 (+) | False | XLOC_013059 |
| TCONS_00025962 | lncRNA | downstream | 285122 | 45763546 ~ 45777627 (+) | True | XLOC_013059 |
| TCONS_00025968 | lncRNA | downstream | 331101 | 45809525 ~ 45813501 (+) | True | XLOC_013061 |
| TCONS_00025940 | mRNA | upstream | 192545 | 45114392 ~ 45264117 (+) | False | XLOC_013049 |
| TCONS_00025941 | mRNA | upstream | 192545 | 45200043 ~ 45264117 (+) | False | XLOC_013049 |
| TCONS_00025942 | mRNA | upstream | 196786 | 45228691 ~ 45259876 (+) | True | XLOC_013049 |
| TCONS_00025935 | mRNA | upstream | 582328 | 44849809 ~ 44874334 (+) | False | XLOC_013046 |
| TCONS_00025931 | mRNA | upstream | 636472 | 44795711 ~ 44820190 (+) | False | XLOC_013045 |
| TCONS_00025945 | mRNA | downstream | 4858 | 45483282 ~ 45519748 (+) | False | XLOC_013053 |
| TCONS_00025946 | mRNA | downstream | 25938 | 45504362 ~ 45517671 (+) | True | XLOC_013053 |
| TCONS_00025948 | mRNA | downstream | 48161 | 45526585 ~ 45569107 (+) | False | XLOC_013054 |
| TCONS_00025949 | mRNA | downstream | 64557 | 45542981 ~ 45561786 (+) | False | XLOC_013054 |
| TCONS_00025950 | mRNA | downstream | 72359 | 45550783 ~ 45569024 (+) | False | XLOC_013054 |
| TCONS_00025943 | other | upstream | 197565 | 45258981 ~ 45259097 (+) | True | XLOC_013050 |
| TCONS_00025939 | other | upstream | 405712 | 45050835 ~ 45050950 (+) | True | XLOC_013048 |
| TCONS_00025934 | other | upstream | 635916 | 44815507 ~ 44820746 (+) | True | XLOC_013045 |
| TCONS_00025912 | other | upstream | 1302391 | 44153674 ~ 44154271 (+) | True | XLOC_013036 |
| TCONS_00025911 | other | upstream | 1337400 | 44119137 ~ 44119262 (+) | True | XLOC_013035 |
| TCONS_00025947 | other | downstream | 48059 | 45526483 ~ 45575178 (+) | False | XLOC_013054 |
| TCONS_00025985 | other | downstream | 1098597 | 46577021 ~ 46577139 (+) | True | XLOC_013073 |
| TCONS_00026000 | other | downstream | 2960073 | 48438497 ~ 48438613 (+) | True | XLOC_013089 |
| TCONS_00026002 | other | downstream | 3063236 | 48541660 ~ 48553208 (+) | True | XLOC_013090 |
| TCONS_00026020 | other | downstream | 3932993 | 49411417 ~ 49447042 (+) | True | XLOC_013104 |
