RNA id: TCONS_00025945


Basic Information

Item Value
RNA id TCONS_00025945
length 2469
RNA type mRNA
GC content 0.52
exon number 20
gene id XLOC_013053
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 45483282 ~ 45519748 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATTTGCCAATATCTTCATTGCCTGCTATAAACCAGGAGAGCTCGACACTCCTGCAGGTCCTGCCCAACATCCTGCCACACGTGTTGGCCATGCAGGAGCAGGAGGACGCCGAGACCCAGACCGAGCGCTGGACGCCGCTCATCGAGAGCATCAAGAAAGAAGCAGAGGAGACCACTCTTGCTCAAATCCCCCTTTTCAGGAGTCTGGTGGACGTGTGTCCGGCCGAGCCTTCACCGCACGAGTCTGAGATCTCAGATCAGCCTCCTCAGAGTCCAGCACTGTCACAAGAAGAACCTGTGAGCACTCAGCCTGAGCGCACCACATCTCCACCTGCTGATGCTGAACAGGTAacaattcttaaagggatagctcatcaATGTCCTCTTTATTTACTCATACTCAAAGGCCTTGAGCGTCCCATGTCAGCAGCCAGTCAAACCAGTATCGTTGTGCATGAGCGTCTGCAGGAGCTGGTCAAGCTGTTTAAGGGCCGAACTGAACGTAGACGAGACAAACTGGTGGATCCAGATGAGTCTGATGATGAAAGCCCTTCAAAGCCTGGCGAAGCGCCGCCTCCACCACCTCCACCAGAGCAGAAGAAAGAGGCTGAAGAGAAGCCtgtggaggaggaagaggaggaagtgCAGATCTATGAGTTCATGGTTCCCCAATTCAAAATCCCCCAGATGCCTGAGTGGCTGAGAGCCATTCTGGCATACCGCTTCCCCTCCAGCATTGACCCTTACACTGATCTGATCTACGTGGTGTGGCTGTTCTTCGTGACGTTTGCGTGGAACTGGAATGTTTGGCTGATTCCTGTGCGCTGCACTTTCCCCTATCAGACGCCTGACAACATTCACTGGTGGCTGCTGATGGACTACTTCTGTGACTCCATCTACATCATGGACATCTTCGTGGTTCAGCCACGACTGCAGTTCGTCAGAGGAGGAGACATTGTGTGCGACAAAAACGACATGAGAGAGAACTACAGGCAAACAGAGCGATTTAAGATGGATGTGATCAGTCTCTTTCCACTGGATGTCCTCTATGTCTTCACTGGTGTCAAATCTCTCTTACGGTTTCCTCGTCTTCTAAAGTACAACGCGTTCTTCGAGTTTAATGATCGTCTGGAGGCTTGGATGAGCAAAGCCTACATTTACAGGGTGATCCGTACAAGTGCGTATCTGCTGTACTCTCTGcactgcaatgcctgtattttctATTGGGGCTCGGACTATGAGGGACTGGGCTCCACCAAATGGGTTTATAATGGCAAAGGGAACAGTTACATCCGCTGCTATTACTTCGCTGTCAAGACTCTGATCACCATCGGAGGTTTGCCGGACCCCACCACTGTCTTTGAAATTGTCTTTCAGCTGGTTAACTACTTCGTGGGGGTCTTCGCTTTCTCCATTATGATCGGTCAGATGAGAGACGTGATCGGAGCCGCTACAGCAGGAGAAGCGTATTATAGACACTCTGTGGACAGCACTGTCAAATACATGACCTCCTACAGGATCCCCCGCGACGTCCAGAACCGCATTAAGACTTGGTATGACTACACCTGGAAGTCTCAGGGCATGCTGGATGAACAGGAGCTGCTCATACAACTGCCAGATAAGATGCGTTTGGACATCGCTGCTGATGTCAACTACAGCATCGTCAGTAAGGTGGCGCTCTTTCAGGGATGTGACCGACAGATGATATTCGATATGCTCAAGAGGTTGAAATCTGTGGTGTATCTTCCAGGAGACTTTGTCTGTGAAAAAGGAGAGATCGGCCGAGAGATGTACATCATCAAAGCTGGAGAGGTGCAGGTGGTCGGAGGGCCTGATGGGAAGACGGTGTTTGTGACTCTGAGAGCTGGCTCTGTGTTTGGGGAAATCAGTTTGCTGGCAGGTGGTGGTGGAAACCGACGAACAGCTAATGTAAAAGCGCATGGTTTCGCTAACCTCTTCATCTTGGACAAGAAGGACCTGGCAGAGATCTTAGTGCACTATCCCGAATCCCAGAAACTGCTGCGCAAGAAGGCCAAGAAGATGTTGACCAAAGATAAGAAGCCTGCAGAAGCGAAGGGCGAGGTTAAAGACACGGGTGAGGTTATTCCTCAGCGGCCCGAGACTCCCAAACTCTACAAGGCAGCCCTAGAGGTCGCCACAGGACAGACGTTTTCCCGGCTGAAGGAGtcttgtgttttgttttatcaccgctctccgtCCACCCCTATATCCGGCATGAGCTCCACAGGTCCAGTGCCGCCACCATCCCCCATGCACCGCCGGTCCCCCATTCCCCGGCCTCAAATTCTAGATGAAGACGACATGGTGTCCGAGACCACCGACAGCACCGTGATCATTCGCATGACTCCCCGCGTGGAGGGAGAGGAGATTCTGTCTGTGGAAATCAGTCCTGCGGAGGGAGCAGAAGCAGAGATGGAGGAGCCCCAAAAAACTGAAGACAAGTGA

Function

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0007601 visual perception biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005221 intracellular cyclic nucleotide activated cation channel activity molecular_function
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-164 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 45. Orthologous to human CNGB1 (cyclic nucleotide gated channel subunit beta 1).

Ensembl:

ensembl_id ENSDART00000183725

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026935 lncRNA upstream 4858 45456662 ~ 45478424 (+) False XLOC_013052
TCONS_00026934 lncRNA upstream 4858 45456662 ~ 45478424 (+) False XLOC_013052
TCONS_00026936 lncRNA upstream 4858 45468223 ~ 45478424 (+) True XLOC_013052
TCONS_00025944 lncRNA upstream 156525 45313968 ~ 45326757 (+) False XLOC_013051
TCONS_00026933 lncRNA upstream 156573 45316478 ~ 45326709 (+) True XLOC_013051
TCONS_00027165 lncRNA downstream 153729 45673477 ~ 45675969 (+) True XLOC_013056
TCONS_00026937 lncRNA downstream 200540 45720288 ~ 45722866 (+) True XLOC_013058
TCONS_00025961 lncRNA downstream 243798 45763546 ~ 45768420 (+) False XLOC_013059
TCONS_00025962 lncRNA downstream 243798 45763546 ~ 45777627 (+) True XLOC_013059
TCONS_00025968 lncRNA downstream 289777 45809525 ~ 45813501 (+) True XLOC_013061
TCONS_00025940 mRNA upstream 219165 45114392 ~ 45264117 (+) False XLOC_013049
TCONS_00025941 mRNA upstream 219165 45200043 ~ 45264117 (+) False XLOC_013049
TCONS_00025942 mRNA upstream 223406 45228691 ~ 45259876 (+) True XLOC_013049
TCONS_00025935 mRNA upstream 608948 44849809 ~ 44874334 (+) False XLOC_013046
TCONS_00025931 mRNA upstream 663092 44795711 ~ 44820190 (+) False XLOC_013045
TCONS_00025948 mRNA downstream 6837 45526585 ~ 45569107 (+) False XLOC_013054
TCONS_00025949 mRNA downstream 23233 45542981 ~ 45561786 (+) False XLOC_013054
TCONS_00025950 mRNA downstream 31035 45550783 ~ 45569024 (+) False XLOC_013054
TCONS_00025951 mRNA downstream 51630 45571378 ~ 45590423 (+) False XLOC_013054
TCONS_00025952 mRNA downstream 53503 45573251 ~ 45594749 (+) False XLOC_013054
TCONS_00025943 other upstream 224185 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00025939 other upstream 432332 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025934 other upstream 662536 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025912 other upstream 1329011 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025911 other upstream 1364020 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025947 other downstream 6735 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025985 other downstream 1057273 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00026000 other downstream 2918749 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00026002 other downstream 3021912 48541660 ~ 48553208 (+) True XLOC_013090
TCONS_00026020 other downstream 3891669 49411417 ~ 49447042 (+) True XLOC_013104

Expression Profile

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