RNA id: TCONS_00025948


Basic Information

Item Value
RNA id TCONS_00025948
length 510
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_013054
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 45526483 ~ 45594749 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTTCAGCTCCGTAAACAGAGGAATAAAACACTACTTTTCGAAAAGAGTGGAGTGAAACGAGAAAGAAACCGGGTACGGAGGAAACAGAGGGCGGAGGAAGGAGTTTGGCGTGCTGGCCTGAGACCCCGTCCAGCGGTGTGGTCTGCTCGGCCCTGCGGTCATGTACGGCACACGAAAGACCTGGGACGTTGGCCACACCCCCTGCCTGCAGGAGCTCTGGAACAAAGACATCTCATTGGATGCAAGTTCTCTGGATATCCTGATGAGTGATGGTGAAGAGGAGAACTCCTTCCTCTCGTTGCCCAACTCTGTGCTTCAGCGCCACTgtttgacctctgacctctcaGAAACGGGAACCTCTGAACAGCAGCAGCTGCTTATACAGACATTGCAGGAGAGAGTTTGTGAGTTTCAGGCACGTTTGCGCAGCGAAGACGCAGCTAAAAGACTCCTGCTTCAGCGACTGCAGACTCACGATCACCAGCTCAACCAAGACAACCATCAGAA

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008569 ATP-dependent microtubule motor activity, minus-end-directed molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3724 Predicted to enable ATP binding activity; microtubule binding activity; and minus-end-directed microtubule motor activity. Predicted to act upstream of or within microtubule-based movement. Predicted to be located in microtubule. Orthologous to human KIFC3 (kinesin family member C3).

Ensembl:

ensembl_id ENSDART00000138511

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026935 lncRNA upstream 48161 45456662 ~ 45478424 (+) False XLOC_013052
TCONS_00026934 lncRNA upstream 48161 45456662 ~ 45478424 (+) False XLOC_013052
TCONS_00026936 lncRNA upstream 48161 45468223 ~ 45478424 (+) True XLOC_013052
TCONS_00025944 lncRNA upstream 199828 45313968 ~ 45326757 (+) False XLOC_013051
TCONS_00027165 lncRNA downstream 104370 45673477 ~ 45675969 (+) True XLOC_013056
TCONS_00026937 lncRNA downstream 151181 45720288 ~ 45722866 (+) True XLOC_013058
TCONS_00025961 lncRNA downstream 194439 45763546 ~ 45768420 (+) False XLOC_013059
TCONS_00025962 lncRNA downstream 194439 45763546 ~ 45777627 (+) True XLOC_013059
TCONS_00025968 lncRNA downstream 240418 45809525 ~ 45813501 (+) True XLOC_013061
TCONS_00025945 mRNA upstream 6837 45483282 ~ 45519748 (+) False XLOC_013053
TCONS_00025946 mRNA upstream 8914 45504362 ~ 45517671 (+) True XLOC_013053
TCONS_00025940 mRNA upstream 262468 45114392 ~ 45264117 (+) False XLOC_013049
TCONS_00025941 mRNA upstream 262468 45200043 ~ 45264117 (+) False XLOC_013049
TCONS_00025942 mRNA upstream 266709 45228691 ~ 45259876 (+) True XLOC_013049
TCONS_00025951 mRNA downstream 2271 45571378 ~ 45590423 (+) False XLOC_013054
TCONS_00025952 mRNA downstream 4144 45573251 ~ 45594749 (+) False XLOC_013054
TCONS_00025953 mRNA downstream 4309 45573416 ~ 45586650 (+) False XLOC_013054
TCONS_00025954 mRNA downstream 4309 45573416 ~ 45592410 (+) True XLOC_013054
TCONS_00025955 mRNA downstream 76250 45645357 ~ 45658076 (+) True XLOC_013055
TCONS_00025943 other upstream 267488 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00025939 other upstream 475635 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025934 other upstream 705839 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025912 other upstream 1372314 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025911 other upstream 1407323 44119137 ~ 44119262 (+) True XLOC_013035
TCONS_00025985 other downstream 1007914 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00026000 other downstream 2869390 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00026002 other downstream 2972553 48541660 ~ 48553208 (+) True XLOC_013090
TCONS_00026020 other downstream 3842310 49411417 ~ 49447042 (+) True XLOC_013104

Expression Profile

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