RNA id: TCONS_00027165


Basic Information

Item Value
RNA id TCONS_00027165
length 2302
lncRNA type sense_over
GC content 0.36
exon number 2
gene id XLOC_013056
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 45666489 ~ 45676686 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGGGTACAAATACACTTCTACCCTTACATAACCTCTCTGTCATGTTTATTATGTCATACAGTCTCTAATTACCATCTATTTGTCATATCTTAGCatttaaaaaagctattttaGTACACTTAATTGCCAGAACAGGCACGGCTCATGCATGCAATTACATTAATTGTAGTCATTGTTTGTTTCTAAATGCTTAATGTCTCAAAAACGCCAATGTAGTTTAATTGTTTATAGTGTATTAAAATGGTCACACATCTAATTCTGCATATCTAACGTCTATCTACAGTTCCAGGCCAGGAAGTATGAGACGATAACCAATCACCGCGATGAATGGATGGACTAAACGCCTATTTTCTTGATTATGAACTGAACAATTTTCAACCAAAGGCTTTTGGATTTAATTCCCTAGGATAAGCTACTAATATACATATTGTCCTGCAGAACTACACTACAGCTTTTAGCTTATCATGAATTAAAAAGCAATGGAAATGAAATCACCGGATAGTTCTGAAGagcatcCCTGGTATAGATCATAGgactcaaactcggtcctggagggctgcatctctgcacagttttgctccaatcctaatcaaacaaaGCTGatgcaaataatcaaggtgttcaagactactagagactatcaAGCAGGCGTGAGTTGGAAGTttttggagctaaactatgcggagctgcggccctccaggaattgagtttgagaccattggtaTAGATAGTCataacttttaaatataaaaagtattataattgtgtttactttaaaaacataattaattaaCAGTTTTGATATTAATTATTGTATCAATAAAAAGCCAGATCGTATAGTTTaacttattttttcttctagggatTTAATGAAGGACACAGCATCGTTTTATCTTTTTTAATCCTCTGTTACAGAGATATAGTGAAATGTGACTTGCTATTTAGTATTTACTGGATCAATATTTGTAATAATTCAGTAATCAGAGCAAGATTACCTCCTCTAACCTCAAGACACTACTCAGGCTGTGTTTTTGGTGCAAAACCGTGTACATATAGATGAATGAATTCTGCTGCTTTGatcttattttgatttaatttaattctacTGGCAGATGAAACTGTTTTGCGGAGTTATGAAACTGCACAGTTGCATTAGTGGTTTCTGGAGGCTGAAGCGTGTCTTTTACTTGACAGCACGTCAGCTCTGATGTTATCGTCATATATTACTAGCCTTCATAATAAACTTCTTCCTTTGTTGACAAATTTTGCATGTTAATGTTGTCTTGCTACATCCTGGAGCATAATGAAAGTGTGGAAGATGCATATCGACAACAAAGAAGCCTTTTCGATGCAAATGATTAGTACAAATATAATGACACTGTGGTTGTGGTCAGGACAAGTGTTGGGGAAGGTTACTTTTGAAAGtactgcattacaatattgagttactccccaaaaatgTATCTAGCTGCATTACTTGGTTATGTTTTATGGTGAGTTATGTTACGTTACTTTATCTGACCTGGCTGATGCTTGATCTCTTTCAGGACAggcaggtttttttttgtttgttttttttcttgttatatttttttatttgaggagttgtgcatttaaaaaaacacagtgtagccttcatttattaaaacaagacattAAAAATGTAGGATAATGTTGTCTACTAAGAACGTCCTGACCCaagagctatataaataaattaattaaagtttaaagcaatgtgtttgctacctctaccattttttttcttgtgaaaaaGTAACATCAATGTCTTTTCAGATAATCCTCTTTACCTTTTATACCATGTgtataaataataagaatatttccaTCACAGTCAGCAATTTAATCCGGAGCCATGTTaatttctgtctgttcctgcattctctcattggGTGTTGGATTAAACATGAATATGTTAATTTTAactcagcaatttattttttaaaagcgaattaactaaactaaaaagtaactctcATTACTATTTTCAAATTATTTCTTGTGTGCATAATTTTTATGGATAGAATTTCAAAGTGCAGCCTTGGGCTGCagggggtccggttcggggaccacaggatttcatctgttatttgcagacgatgttgttctgttggctttatcgaacatggaccttcagcatgcactggggggGTTTGTTGCCGGGTGTGATGctgctgggatgagaatcagctcCTCCGAGGCCATGATGCTCCACTGGAAAAGGGTGGTTTCCATCTCCgggttggaggaaagtctttaccctaggtggaggagttcaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026935 lncRNA upstream 195053 45456662 ~ 45478424 (+) False XLOC_013052
TCONS_00026934 lncRNA upstream 195053 45456662 ~ 45478424 (+) False XLOC_013052
TCONS_00026936 lncRNA upstream 195053 45468223 ~ 45478424 (+) True XLOC_013052
TCONS_00025944 lncRNA upstream 346720 45313968 ~ 45326757 (+) False XLOC_013051
TCONS_00026933 lncRNA upstream 346768 45316478 ~ 45326709 (+) True XLOC_013051
TCONS_00026937 lncRNA downstream 44319 45720288 ~ 45722866 (+) True XLOC_013058
TCONS_00025961 lncRNA downstream 87577 45763546 ~ 45768420 (+) False XLOC_013059
TCONS_00025962 lncRNA downstream 87577 45763546 ~ 45777627 (+) True XLOC_013059
TCONS_00025968 lncRNA downstream 133556 45809525 ~ 45813501 (+) True XLOC_013061
TCONS_00027166 lncRNA downstream 273797 45949766 ~ 45953343 (+) False XLOC_013064
TCONS_00025955 mRNA upstream 15401 45645357 ~ 45658076 (+) True XLOC_013055
TCONS_00025952 mRNA upstream 78728 45573251 ~ 45594749 (+) False XLOC_013054
TCONS_00025954 mRNA upstream 81067 45573416 ~ 45592410 (+) True XLOC_013054
TCONS_00025951 mRNA upstream 83054 45571378 ~ 45590423 (+) False XLOC_013054
TCONS_00025953 mRNA upstream 86827 45573416 ~ 45586650 (+) False XLOC_013054
TCONS_00025959 mRNA downstream 819 45676788 ~ 45698627 (+) False XLOC_013057
TCONS_00025958 mRNA downstream 819 45676788 ~ 45698627 (+) True XLOC_013057
TCONS_00025960 mRNA downstream 32775 45708744 ~ 45732585 (+) False XLOC_013058
TCONS_00025964 mRNA downstream 105146 45781115 ~ 45791224 (+) False XLOC_013060
TCONS_00025963 mRNA downstream 105146 45781115 ~ 45791224 (+) False XLOC_013060
TCONS_00025947 other upstream 98299 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025943 other upstream 414380 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00025939 other upstream 622527 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00025934 other upstream 852731 44815507 ~ 44820746 (+) True XLOC_013045
TCONS_00025912 other upstream 1519206 44153674 ~ 44154271 (+) True XLOC_013036
TCONS_00025985 other downstream 901052 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00026000 other downstream 2762528 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00026002 other downstream 2865691 48541660 ~ 48553208 (+) True XLOC_013090
TCONS_00026020 other downstream 3735448 49411417 ~ 49447042 (+) True XLOC_013104

Expression Profile

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