RNA id: XM_036977095.1


Basic Information

Item Value
RNA id XM_036977095.1
length 3416
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110532027
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 384207 ~ 421233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGATTCCAGAGTGGGTACTGGAGGCAGTGGTGTGTttgtcgtcactagttaccacagccataaAGTCATTATTATGGCCAAAACGAGCCTATTTCTACAAGTTATATCCTTAAATCTGTTTTtaaacctaaccacactgctgACATGATTAAcctttaaattaagaccaaaaagggaatttttaataaaaaaaaacgaTATATAGCCAATTTTTGACTTTGTggttgtggtaactagtgacaactgGTGCGTGTTCTGCTCGCTTCTGTCCATTATATGGTGGATGATGGCCGCTTCAAAGCCTGTCGAGTCGCAGTCCGGGAGCGGTTTCCCCCGCTGGCAGCTGGCCCTCCTGGTCGGAACCCCCATAGTGCTGGGTGTAGGAGCCGTTTACCTGTGGAAACGAAACAAGACGAAGGACACACCGGGGAAAAGCAATGGGGAACGGACAACTCCAGAAGGTAGCGCCAACCCCGTCCAGGGCCAAGGAGCCCGTTGCGAGCAGGAGGACATGAGTCCTCTGGACCGGGCCCAGGGTGCTAAGAACAAGGGCAACAAGTACTTCAAGGCTGGGAAGTATGAGCAGGCCATCCAGTGTTACACAGAGGCCATCGGTCTGTGTCCTAGAGACAACCAGACAGACCTGTCCACCTTCTACCAGAACAGAGCTGCTGCCTACGAACAGCAGATGAAGTGGACAGAGGTGGTGCAGGACTGTACCCAGGCTGTAGTGATTAATCCACGCTACATCAAGGCCCTGTTCAGGAGGGCCAAGGCCCTGGAGAGACTGGACAACAAGAAGGAGTGCCtggaagATGTGACGGCGGTGTGTATCCTGGAGGCCTTCCAGAACCAGCAGAGTATGCTGCTAGCAGACAAAGTCCTCAAACTGCTGGGGAAGGAGAAGGCCAAAGACCAATACAAGAACCGTGACCCCCTGATGCCTTCTCCTCAGTTCATCAAGTCCTACTTCGGCTCCTTCACTGATGACATTATCTCCCAACCGCTCCAGAAGGGTGAGAAGAAGGACGAGGACAAGGACAACGAGGGCGAGGTCGCAGAGGTCACagaaagTTCTGGTTATCTGAAGGCCAAGCAGTACATGGAGGAGGAGAACTATGATAAGATCATCAGTGAGTGCACTAAGGAGGTGGAGTCTGGGGGCAAGTACACTGCTGAGGCCCTGTTGCTACGGGCAACCTTCTACCTCCTGATTGGCAACGCCACCGGCGCCCAGCCCGACCTGGACCGGGTCATCAACATGGAGGACGCCAACGTCAAGCTGAGGGCCAATGCTCTGATCAAGCGTGGCAGTATGTacatgcagcagcagcagcctatgATGTCAACACAGGACTTCAACATGGCCGCTGAGATCGACACGCGCAACGCAGACGTCTACCACCACCGGGGACAGTTGAAGATCCTTCTGGACCAGGTAGAGGAGGCCGTCCGAGATTTTGATGAGTGCATCCTGCTCAGACCTGACTCTGCTCTGGCACAGGCTCAGAAAGGCTTCGCCCTGTACAGGCAGGCATACACTGGCAACAGTCAGTCCCAGGTGCAGACGGCCATGGACGGCTTTGAGGACATCATCAGGAGGTTCCCTAAGTGTGCTGAAGGATACGCTCTGTATGCACAGGCATTGACTGACCAGCAGCAGTTTGGCAAGGCAGATCAGATGTACAATAAGTGTATTGACCTGGAGCCAGACAACGCTACAACATACGTCCACAAGGGgttgttGCAGCTCCAGTGGAAGCAGGACTTGGACCTGGGCCTGGACCTCATCAGCAAGGCCATTGAGATCGACAACAAATGTGACTTTGCCTATGAAACCATGGGCACTATTGAGGTTCAGAGGGGAAACCTGGAAAAAGCGATAGACATGTTCAACAAGGCCATCAACCTGGCCAAGTCAGAGATGGAGATGGCCCACCTCTACTCACTGTGTGATGCAGCCTATGCCCAGACTGAGGTAGCCAGGAAGTACGGACTGAAGCCACCCACGCTGTAACTCTTCTGTCACACGACCCACCCTACCCAAGTCTCTCCACTGCTGAGCCTGATCATATTATAACTGCAGATGTTTGAGTCATTTAGTTTTGTACAAGACCTGAGAACTACCGGTGGTTAAAGATGAAAGAAACATAtgtgactagggttgcaaaattacggtaactttcccaaaattcccagttTTTTCTGAAATCCAGGAATTACGGGGAAATTAGCAGGAAATCCATGAACAtgccaaccaggatttctggaaaaccagggaggGAAGGTTAGGAAAGTAACTGGAATTTTGCAATCCTGTCTGACCATACATTATTATCATGTTTATGTCACGTTGAATTGGAATTCAAACCAGGGCTAGAACCCAAATCCGCTGGTAAATAGGGTGGTCTtaaccctcacatccctctccttCAGGGCACTTGACCCACACACCCCCATCTCCTGATATTTAGTTTAAGCCGGACCGTGACCACTATTGGCCCTCCTGTACCATTCAGAATGTCTTGTTTTCTCTATCAGGAACATGTGAATGGCCAGGTATCCATCCAGAAATAATTAAATCTTCTAAAATCAAAGGGAGATTCACTCAATAGATTTCTCCATTCTATTGCCGACTTATCCATATTTGGACATATTTTAAGATAAATGTATTATGTTGCCTCCACACAGACCTGTATAGAGTTCTAATGGACTGTTCATTTGCTACTATATATGTTTCTATTCTTCTTGTTCTCTAACAAATATTTCTGTCCAGACAGCTCCATATCCTCGAGATAACGTAACATTATCATTGAATGGCAAATTTAAATGCAGGATTAAAATGTtagtcaaatgtgtgtgtgtgtgtgtgtgtaatgatggatgTCTGTGTTTGGTGTAATGCTGCAGCTGATATGACAATGTGTGGGATAAGAGAGTCCAGGTGACGTTGGGGTCCTAAAGTGTTGTTTATTTCGGGGGATTGCCTGTTTTTCCTTTTTATATATTCTGTACAGCATGTGAGATTTCTCTTTCTAAGTACATGTTAATGCAATGCAATGCTCGTGCTGAAATACTGTTTCTGAAACTATCTGGCCATTTTGGAAAGGCTAGACTGAATAAGAATGAACATTTAGACCTAAAATTACAGCTTTAATTCAGCAATTCTCAAAATGTACCGCTTCTATTTTTATGTGGTTGTTTTCCCAACTGCTTGTAGATTCCGAAAATGTCAGAAGGGAcaattattttaatatttttttcagGCTCAGTCAACTTTTACTTTGCAGGGGGCAGGTATGCCATCATACAGTGCCTACAGAGAGTATTCACacccagtggtgtgtattcatggatgccaagggaagccaggcttccccaaaaaattgaccaataaaaaaaacaaaatcatTCA

Function

GO: NA

KEGG:

id description
K17768 TOM70; mitochondrial import receptor subunit TOM70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413 lncRNA upstream 8714 375179 ~ 375493 (+) False G345
TU414 lncRNA upstream 8714 375179 ~ 375493 (+) True G345
TU228 lncRNA upstream 19028 364743 ~ 365179 (+) True G184
TU227 lncRNA upstream 21138 362704 ~ 363069 (+) True G183
TU207 lncRNA upstream 64233 318047 ~ 319974 (+) True G166
TU446 lncRNA downstream 1983 423216 ~ 423512 (+) True G369
TU447 lncRNA downstream 2302 423535 ~ 423768 (+) True G370
TU450 lncRNA downstream 10428 431661 ~ 432635 (+) True G373
TU453 lncRNA downstream 14280 435513 ~ 435795 (+) True G376
TU475 lncRNA downstream 42269 463502 ~ 464018 (+) True G396
XM_036977160.1 mRNA downstream 18732 439965 ~ 497128 (+) False tbc1d23
XM_036977245.1 mRNA downstream 18733 439966 ~ 497128 (+) False tbc1d23
XM_036977209.1 mRNA downstream 18734 439967 ~ 497128 (+) False tbc1d23
XM_036977292.1 mRNA downstream 18735 439968 ~ 497128 (+) True tbc1d23
XM_021602630.2 mRNA downstream 180870 602103 ~ 617595 (+) True nit2
TU206 other upstream 64233 318047 ~ 319974 (+) False G166
TU83 other upstream 253944 120466 ~ 130263 (+) True G51
TU80 other upstream 263900 112959 ~ 120307 (+) True G50
TU55 other upstream 290489 56555 ~ 93718 (+) True G26
TU47 other upstream 311908 52711 ~ 72299 (+) True G19
TU707 other downstream 582550 1003783 ~ 1009153 (+) False G583
TU710 other downstream 582550 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1657665 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1657665 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1657665 2078898 ~ 2079603 (+) True G961

Expression Profile