RNA id: XM_036977245.1


Basic Information

Item Value
RNA id XM_036977245.1
length 4100
RNA type mRNA
GC content 0.51
exon number 18
gene id tbc1d23
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 439965 ~ 497128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCGGAGGCAGCCCGGTTCCAAAACGAACGCGACCAACGCTAACCAAGTTCAACCTGGGAAGGTCCTCGGCATTAATCGAATCCTCTCCATGCTCTTCTGGACGGCAATTTTGACGTTGACGTCAACACAGCAATGGCGGATGCAGTGGAGGAAGTTCTTGAAGGCAGCTGGGATCAGGATCTGGCTGAGGCCCTGGACTCTGGAGGCTCTGACCTGGAGCTAGAGATGGACATACAGGGGGAGCTGGGGTTGGGGGGAGGGCTGGGGCTGGATGGGGAAGAGGCCGGGGAGGTTATTCGAGTCCAGGAGCTACCAGCCCAGCAGAGAGCCAAGCTGTGGAAGATTGCGCTGAATGTGGCAGGTAAAGGAGACAGTCTGTCCTCGTGGGATGGAGTCCTGGATCTTCCAGAACAGAACCTTATACACACCCGCTGCCAGCAGCTCATTGACCAGCTGGGGTGCGTGGCGGAGGAGGAGGGACGTGACATGGTGTCTGACGTAGAGTCTGTCATCACGTTCTACTGTAAGTCCCGAAACATCACCTTCACCCCTGACCTCTCCTGGCCACACCTCCTCAAACCCCTGCTGGGCCTGCAGCTGCCCCGCTCCGATCTCTACAACTGCTTCTACGCCATCATGAATAAATATATCCCACGGGACTGTGTAGTGAAGGGCCGTCCGTTCCACCTGTACAGACTGCTGCTTCAGTATCATGAACCAGAACTCTGCTCCTTCCTCGACACCAAGAAGATCACCCCAGACTCCTACACTATACACTGGCTAGGCAGTCTGTTCTCCAGTCACTGCCTACCAGAGGTGACTCAGGCCATGTGGGACTTTTACCTCCAACAGGCTGACCCCTTCCTCATCTTCTTCCTCCTGCTCATCATCCTCGTCAATGCCAAAGATAACATCCTGCAACAAGAAGGGGACAGTAAAGAAGATATCATTAAGATGTTGGAGGACTCTCCTGCCCTGTTAGAGGCTGATGATATAGAAGACCTGTTCTCTCTGGCCCAGTATTACTGGAGCAAgacccctctgtctctcagaAAGgaGAACCAGAACTTGTTTGGGTCCAGCCTGGTGGCACTGAAGGAGGAAGACATGGATCTGAGTcaggctctctgtctccctgtgtctgtccCTGAGATACTGCAGGCCAACCAGCTGCAGCCTGTGAGTAACAGCACCCCTGAGGAAGGGGTTCGGTTCTTTGTGGTGGACTGTCGACCTGCTGAGCAGTACAACGCTGGACACCTCTCTACTGCCTTCCACCTGGACTCAGACTTGATGCTGCAGAATCCGTCAGAGTTCAGCCTATCGGTGAAGTCCCTCCTGGAGGCCCAGAAACAGAGTCTAGAGTCTGGCTCCAtcgctagtggagaacacctctGCTTCATGGgttcagggagggaggaggaggacatgtACATGAACATGGTGCTGGCACACTTCCTACAGAAAAACAAAGAATACGTCAGTATCGCTAAAGGTGGTTTTATGGCCCTGCAGCAGCACCTAACAGACATCAATGTGGAGGGACCAGACAACTATGTCCACTGGATAGTCAGCACCTCTGGATCAGCTGAAGGAGAGGCTTTGAGCACCACAGGGGATAAAGGAGTCAAGTCTCTGGTCAACAAGATGACCTTTGCCCTCAAGTCCAAGTCTGTCATAGCGAAGGAGAAGATGATCAGCTTTATGGAGAACACGGCTACACCTGTAGACAGACATGTGAGCAGTAGTGACCGGGTTGGAAAACCTTACAGAGGAGTGAAGCCAGTGTTCAGCATCGGTGATGAGGAAGAGTATGATACAGATGAGATTGACAGCTCGTCCATGTCGGATGATGACAGGAAGGAGATCGTAAACATCCAGACGTGGATGAACAAACCAGACGTGAAGCACCATGTTCCCTGTAATGAGGTCAAGGAAACCGGACACATGTTCCCCAGTCACCTGTTGATCACAGCTACCCACATGTACTGTCTGAGGGAGATCGCGTCCAGGAAGGGTTTTGCCTATATCCAGTCCAGACAGGCCCTCAACAGCGTGGTCAAGATCACCTCCAAGAAAAAACACCCAGAACTCATCACCTTCAAGTTCGGCAACAGCAACACTGCTGGAATAGAGATCTCTGCTGTGGAGAGgtATCTGATCCCCAACGCGGGTGACGCCACCAAGGCCATTAAACAGCAGATCATGAAGGTTCTGGATGCCCTGGAGAGTtcctagagacagacagggatacaTGAGAGCCCCCCCCAGCTGGCCGGGAGGGgagacgtctgtctgtctgtcagctgaGGGCAGGGTGCTCTCTTTCTATtgatatctctctccctttctctctgtcctcctcctcttcccagcCAGGCGAGGACCTGGACAGATCCTGTGTTGACTGTTAACCCTCCCTGTCTGTTGGGCTGAGGgtgtcgtctctctccctccctggttgCTGAGGACTTGAGAGAATGATTGACTGACTGgttcccaaacggcaccctattcaatATATAGTCCTATCGGGcttggtaaaaagtagtgcactatatagggaataaggctctggtctaaagtagtgcactatatagggaatacggctctggtctaaagtagtgcactatatatggaatagggctctggtctaaagttgtgcactatatagggaatagggtcctgtcTGGGAGGCATCCTGAGACTGTTGCTCCCTATTCACCACCCTGGTCTCCTCATCCTGTCTGACATATGTGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATACGTGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATATGTGGGTTACACCCTCCATTACCCAGGACGAGTCCTGTCTGACATACGTGGGTTACACCCTCCATTATCCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATACGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTTCCCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATACGTGGGTTACACCCTACATTACCCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTACCCTGGTCTCATCCTGTCTGACATACGGGTTACACCCTCCATTATCCTGGTCTCATCCTGTCTGACATACGTGGGTTACACCCTACATTACCCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTAACCTGGTCTCATCCTGTCTGACATACATGGGTTACACCCTCCATTATCCTGGTCTCATCCTGTCTGACATACGGTGCactcggaaattattcagaccccttgactttttccacattttgttaagttacagaaTTGCTCTAAAATGGATTAGTTTTCCCCCTTCATCAATCTGCACATAATACCGATAataataaagcaaaaacaggtttttagacatgttagcacatttataaaaagttttaaaaaactgaaatcacatttacataagtattcagaccttttactcagtattttgttgaagcatctttggcagcttcattggcacgcctgtatttggggagtttctcccattcttctctgcagatcctctcaagctctgtcaggttggatggggagcgttgctgcacagctactttcaggtctctccagagatgtttgatcagattcaagtgctgccaccaccatgcttcaccgtagggatggtgccaggtttcctccagcattcAGAACAAAGAGTTTAAttttggcttcatcagaccagagaatcttgctcctcatggtctgagagtctttagttgccttttggcaaactccaagcgggctgtcatgtgccttttcctgaggagtggcttccgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453 lncRNA upstream 4171 435513 ~ 435795 (+) True G376
TU450 lncRNA upstream 7331 431661 ~ 432635 (+) True G373
TU447 lncRNA upstream 16198 423535 ~ 423768 (+) True G370
TU446 lncRNA upstream 16454 423216 ~ 423512 (+) True G369
TU434 lncRNA upstream 44734 393425 ~ 395232 (+) True G357
TU501 lncRNA downstream 60259 557387 ~ 557594 (+) True G420
TU529 lncRNA downstream 115526 612654 ~ 615491 (+) False G447
TU531 lncRNA downstream 115526 612654 ~ 616251 (+) False G447
TU530 lncRNA downstream 118444 615572 ~ 616251 (+) True G447
TU541 lncRNA downstream 134838 631966 ~ 633986 (+) True G456
XM_036977095.1 mRNA upstream 18733 384207 ~ 421233 (+) True LOC110532027
XM_021602630.2 mRNA downstream 104975 602103 ~ 617595 (+) True nit2
XM_036977980.1 mRNA downstream 284712 781840 ~ 972109 (+) False slc9a7
XM_036978058.1 mRNA downstream 592268 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 676583 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 676583 1173711 ~ 1299204 (+) False cyfip1
TU206 other upstream 119992 318047 ~ 319974 (+) False G166
TU83 other upstream 309703 120466 ~ 130263 (+) True G51
TU80 other upstream 319659 112959 ~ 120307 (+) True G50
TU55 other upstream 346248 56555 ~ 93718 (+) True G26
TU47 other upstream 367667 52711 ~ 72299 (+) True G19
TU707 other downstream 506655 1003783 ~ 1009153 (+) False G583
TU710 other downstream 506655 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1581770 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1581770 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1581770 2078898 ~ 2079603 (+) True G961

Expression Profile