RNA id: TU604


Basic Information

Item Value
RNA id TU604
length 2020
lncRNA type sense_over
GC content 0.34
exon number 4
gene id slc9a7
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 781840 ~ 1244153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGAGCAGCAGCACATCTGAAGaggcactagagagagagatggaccagGAATTCCTGTCCCGCAGCACACGCCTTGTCTTTCCCATCGAAGACCACGCCTGACCCCTACACCATGACCCCATGAACCCTCGCCCttcagcccacacacacaccagactatgggaggagaggaggagaatgggagagtgagggttggAGGAAAGGGTTTGGTTTAAAACAGGGCTGATATTAGATGTCATTACTTCCCGGTATGGGACCTCCTGTGTATGCACCCAAAACAATAAATTGCAGCTAAACTAGTACAGTGTAGGATAGCAGGGGTCTGCAATAGGTTTGGCCTTTTCTCTGCTAATAGTCAACATCGAACAACATCATAACAGCCCATtcataggcctctgctacatcatCATAACAGCCCATTCATAGGCCTATGCAACAACATCATCATAACAGCCCATTCATAGCCCTCTGCTACATTATAACAGCCCATTCATAGCCCTCTGCTACATTATAACAGCCCATTCATAGCCCTCTGCTACATTATAACAACCCATtcataggcctctgctacatcataacagcccattcataggcctctgctacatcataTTAGCAGCCCATTCATAGCCCTCTGCTACAACATAACAGCCCATtcataggcctctgctacatcataatagcagcccattcataggcctctgctacatcataatagcagcccattcataggcctctgctacatcataatagcagcccattcataggcctctgctacatcatcataacagcccattcataggcctctgctacatcataacagcccattcataggcctctgctacatcataacagcccattcataggcctctgctacatcataaTAGCAGCCCATTCATAGGCCTCTGCTACAACATAATAACAGCCCAGtcataggcctctgctacAACATCATCATAACAGCCCATtcataggcctctgctacatcatCATAAAAATCCCATTCATAGCCCTCTGCTACATCATAACAGCCCATTCATAGCCCTCTGCTACATCATAACAGCCCATTCATAGGCCTCTTCTACATCATAACAGCCCATtcataggcctctgctacatcataaTAGCAGCCCATTCATAGGCCTATGCTACAACATCATAATAGCAGCCCATtcataggcctctgctacatcataacagcccattcataggcctcttctacatcataacagcccaatcataggcctctgctacatcataacagcccattcataggcctctgctacatcataataacagcccattcataggcctctgctacatcataataacagcccattcataggcctctgctacatcataacagcccattcataggcctctgctacatcataacagcccattcataggcctctgctacatcataataacagcccattcataggcctctgctacatcataacagcccattcataggcctctgctacatcataacagcccattcataggcctctgctacatcatcataaCAGCCCATTCATAGGCCTCTGCTACAAATTAAACTATACGTAAACACATCTGGTTAGAGGCTATATTATCAGTCCAGTGTCAATAACATATCCTAATACTTTCACTCTGATTACACTGATAAAATCACCAATGTCTATATtagatttgtttttttatttttctttgtgCATTGATTGGGGAAAAACAGCATTCAAGAGAAAATGTCCTCTGAAAAAGTCTCAAAAGAAAGGTGAATAATGAAAATATAAGTTTCAGGGAAGAATGGACAGAGAAACGGGCCTTGCCATATTTCTCAAATGTCAAAACAGTGtgtctgtcacgacttcctccgaagtcggttcctctccttgttcgggtggcggtcGGGTCACCGGTCTTCTTGCCATCGTCGATTCCCCTTTTCATttcccatttgttttgtcttgttttcccacacacctggttctcattccctcattacatgttgtgtatttaaccctctgttcccccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU686 lncRNA upstream 2324 967804 ~ 968217 (+) True G562
TU675 lncRNA upstream 28996 941299 ~ 941545 (+) True G551
TU663 lncRNA upstream 29848 887311 ~ 940693 (+) False G545
TU665 lncRNA upstream 53151 910169 ~ 917390 (+) True G545
TU670 lncRNA upstream 82902 884488 ~ 887639 (+) True G546
TU695 lncRNA downstream 12090 988089 ~ 1045254 (+) True G571
TU709 lncRNA downstream 31383 1007382 ~ 1010207 (+) True G583
TU825 lncRNA downstream 249095 1225094 ~ 1225527 (+) True G663
TU831 lncRNA downstream 268358 1244357 ~ 1245764 (+) True G669
TU836 lncRNA downstream 277015 1253014 ~ 1254747 (+) True G674
XM_021602630.2 mRNA upstream 352946 602103 ~ 617595 (+) True nit2
XM_036977160.1 mRNA upstream 473413 439965 ~ 497128 (+) False tbc1d23
XM_036978058.1 mRNA downstream 113397 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 197712 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 197712 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 197712 1173711 ~ 1299441 (+) False cyfip1
XM_036978109.1 mRNA downstream 197714 1173713 ~ 1300624 (+) False cyfip1
TU206 other upstream 650567 318047 ~ 319974 (+) False G166
TU83 other upstream 840278 120466 ~ 130263 (+) True G51
TU80 other upstream 850234 112959 ~ 120307 (+) True G50
TU55 other upstream 876823 56555 ~ 93718 (+) True G26
TU47 other upstream 898242 52711 ~ 72299 (+) True G19
TU707 other downstream 27784 1003783 ~ 1009153 (+) False G583
TU710 other downstream 27784 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1102899 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1102899 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1102899 2078898 ~ 2079603 (+) True G961

Expression Profile