RNA id: XM_036978058.1


Basic Information

Item Value
RNA id XM_036978058.1
length 4092
RNA type mRNA
GC content 0.49
exon number 23
gene id tubgcp5
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1089396 ~ 1133908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATAGGACAGTGACGTCATCGTTAGCGTTGCTAGTAGTCGAGAAGTTGTTGCATGAAGATAGCTAGCTATGATAATAAACATTAACGGCTGAAACAAATTCATTCATTGCAACGTCTTCTGATGCAGAAATAATGCATGCGATTTAATTTCTCTAGTTTAGTATCATAACTTCAAGGGACGTGTCTTTAGGCCTTTACTCGTTGCTAACgcgtagctagctagctcccaCTGTTTCCACATAATGAATTTCAACGCAACGGCCAGCTAATAAGCTGGCATGCTAATTGAAAAATATTTAGCTGGCACTATCCGACGATACAGCATCAAGAGTCCAGCTATCAATAAATGCAGTTTCTTCGTTGGTGAATTTTACAGCACAGTGAATGTATTAGCTTGCTAACGCTAGTCAAATTGGTCACAATAATGTCACAGGCGCACTGGACCAAATTCGAAAAGGAGACCGAGGAAGAGGTGAAGAACCTGGTCAAGCACATCAGTGGGATTCAAGATGAAGAAGAGCAGAACTTTCAACTGGCACTGAAATTTACCTGGTCCAATTTCAGGTTTCACCGTTTCCTAGATGCCAATAGTCATAAAGTTCAACGCAGTGTGAATGGGATCTATGAGAAACTGATGGTGCATTCAGACCTGAGTAAAGCAGAGAGCTGGGTCAGACTGACAGAAGAGTTCCTCAACTCACCTCTACCCAACACAGATGGAACTAAGACTGACGTTCATCACAGTCTCCTGGACCTTCTCCTACACCTCTCCGACTCTCCCCTTAACTCCAACTACAGCGAGACACCCAGACTGAAGGAGACTGAGAAAGAAGACGACTTTGACTGGTGTGGATATTTAAAGGAAGGAGAGCTAGACACAGATCCATATCCAGACACCCCAGAGTGGTCTGAGGAGGAAAGCGAGGACGAGGACAGTCAGCAGCCGCTCAGCAGAGAGGATTCTGGGATACAGGTGGACCGTACCCCCCAGGAGGACCAGGAGAAGACGGTCCCTGTTACCTGGACAGTGGGTGAGCCTGATGCCAGGTCCTGGTTAGAGCAACATGTGGTTACTCCGTACTGGCAGGGCCACACTCCCCGCTTCCCTCACAGTCTCCATCTACACTCCAACCTGCTCAACGTCTGgGACCAACACGTGTACAACACTGACCCATTGTATCTGCCTGAAGAGAAAGCCTTTGTCACCGAGACGCAAGTGATCCGGGAGACATTGTGGCTGCTCTCTGGGGTGAAGAAACACTTTATATTCCAGCATCAGGATGGAAAAGTGGTGGTCAGGAATGATGTGGTGGTCACTCACCTGACTAACAACTGCCTACGGTCCGTGTTGGAGCACATAGCAGTCTATGGCCAGGCAGTGTTCCGGCTGCAGAGGTTTATAGACGAGGTAACGGGGTACGACACTGAGCCCTGCCCTCCAGGCTCCTACTCCTCTAAGCAGGGCACCGAGCCTCCCTTCAGGACTTACCAGGCTTTTGTCTGGGCTCTCTACAAATACTTCACCTCCTTCAAACAGGAGCTCACCACCATAGAAAGAGACCTCATAGGCAAAGATGAGACGGTGACCCTGGCGGGGGTGCTGGACAGACTGACCCCTCACCTGGCCCAGATCAAGGTGCTCCACAAGGTGTTCTGTACGGGTGTGGCAGAGGTCCCCCCTGAGACCCCTAACGTGGTGCGGGCCTCACACCTGCTCAACACACTGTACAAGGCTATCATAGAGTACGACAGCGTGGGAGAGGCATCCCAACAGGCCgtggctctgttattctctctgtggacagagacagtcagaccaTACCTAGAGATCGTGGATGAATGGATCGTTCATGGTCACCTGTTTGACCCCGCTAAAGAGTTCATCATTCAGAGGAACAAAGACGTACCAGTGAATCACAGAGACTTTTGGTACGCCACCTACACCTTGTACAGTATCTCCGAGACGGTGGAGAGCGAGGACAAGCTGAGTGACGCGGCCAGCGGGAGCAGCGCAGGGGAACAGGGATCGAAGTCTCAGCTCACCATGGTCTCCTTCCTCAAGCCGGTCCTCAAACAGATCATCATGGCTGGGAAGAGCATGCAGCTCCTCAAGAACCTGGACTGTAAAGAGGCTGAGCAGACCGATGGCTCCACTAGAGATGCAGAAAGGAAGAGCTTGTACACTCTTTTTCTGGAGTCTGTTCAGTCCCGCCTCCGTTGCCGGGACGACTCCCCCGTGGATACGGTCACCGAGCAACAGGCCACTAAGCAGAGCCTGATCAAGATGCAGTCGATTGTAGCtcagcatctacagatggatgaCATACATGACCCTCTACTGGCCATCAACTTCGCCAGgctGTACCTGGAGCAGAGTGACTTCCACGAGAGGTTCTCAGGCGGTGACGTGATCGTGGACCGTTCGTCTGAGTCGGTGACGTGTCAGACATTTGAGCTGACGCTGCGCTCCTGCCTCTACCCACACATCCAGAAGAGATACATTGAGTGCTGTGGCAACCTCATGACCACCCTGAAGAAGGACTACAGACTGCTGGAGTACCTTCAGGCCATGAGGAACTACTTCCTGTTGGAGGCAGGAGACACCATGTATGACTTCTATACAGCCATCTTTGATAAGGTCCTGGAGAAGGAGAGCTGGCAGCAACTGGCGTTCCTCAACGTTCAACTGCAGGAAGCTGTGGGACAGCGGTGTCCAGAGGACAGCAGCAGGTTGTCCATCTTCCTGGAGACGATAGATCCAGTCAGAAAGAAACAGCCAATTAATAATCTGGATGGTTTGACCCTCAGTTACAAGGTGCCCTGGCCTGTTGACATTGTGGTCAGCTCAGAGTGTCAGAGGATCTACAACCAGgtgttcctgctgctgctgcagatCAAATGGGCCAAATACAGTCTGGACACGCTGGCATTCAGTGATTTGACAGTAGCAGCTAAGCGGTTGGAAGGGACCCCGGAGGAGGTGAAGGCTAAAGAGCCAATCAACCAGCAGATCCACAGGATGTTTCTGCTTAGGGTCAAACTGATGCACTTCGTCAACAGCCTCCACAACTACATTGTGACCAGGATTCTTCACAGCACTGGACTGGAGTTCCAGCACCAAGTCCAGGAGGCTAAAGACCTGGACCAGCTGATTAAGATCCACTACAGATACCTGTCCACTATCCACGACCGTTGTCTATTGCGAGAGAAGGTGAGCTTTGTGAAGGAGGCGATCATGAAGGTTCTCAATCTGGTCCTCATCTTCTCAGACCGCTGGCAGGTTGGCTTTGGAGCGTGGAAGATCGAATCCATTGATAAGATGGAATCTGATTTCAAGAACTGTCACATGTTCCTGGTGACTATACTGAACAAAGCTGTCTGCCGCGGGTCATTTCCACACTTGGAGTCCCTTGCCCTGTCTCTGATGGCTGGCTTTGAACAGTGCTGAGAGAAGAACATCTCTTTCTGCTCGCCCACCAGACCCTTCGCTCCCCCCGAccaccagacccccccccccaaatggcaTCCTCTTCCCTTCAAAGTGCACTAGTTTTGgccctatagggaatagagtggcatttgggatgcatacactTTAGTTGTGACTGTTGTTGTTCTGACTTCATAGCACACAAGACTGGTGAATAAGGATGTCACACTCTCCCCGTTGCTAGTGGAGAAACAGAGCGTGTGTGAAGGGTCTATCCCTTCTCCTAAATCATGGATGCTCCTCCTCAATGCCCTCAAGACAATCCAGAGTCTCAGAAGTATTACAGATGTGTGACTGCTTGTAAATATTGTTGATTTTGAAGCTGTTTTATGGTGTTGTCATCCATATGTAGGCTTCCTGCACAATCCtgctgtttagtgttttacaacTACGGATTTACATTTGTTTGGGTTTTATTGGATTTTGATTTCTGGTGAGATTATTTTTGAATTGTTTTGCATTTGTATATTTGTTAATTGAACTACTGTCAATCCAGAATATCATAATAATGCATGTTTAAATCTCTCTCGTATCTCCCTGGTGTTAGTTTAGTTCATTGAAATGTACGGATAATAAACATTAACTAAATATTCAATCAAA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16572 TUBGCP5, GCP5; gamma-tubulin complex component 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695 lncRNA upstream 44142 988089 ~ 1045254 (+) True G571
TU709 lncRNA upstream 79189 1007382 ~ 1010207 (+) True G583
TU596 lncRNA upstream 113287 975475 ~ 976109 (+) True slc9a7
TU604 lncRNA upstream 113397 970541 ~ 975999 (+) False slc9a7
TU598 lncRNA upstream 113397 972942 ~ 975999 (+) False slc9a7
TU825 lncRNA downstream 91186 1225094 ~ 1225527 (+) True G663
TU831 lncRNA downstream 110449 1244357 ~ 1245764 (+) True G669
TU836 lncRNA downstream 119106 1253014 ~ 1254747 (+) True G674
TU842 lncRNA downstream 133444 1267352 ~ 1268360 (+) True G678
TU843 lncRNA downstream 133488 1267396 ~ 1268081 (+) True G679
XM_036977980.1 mRNA upstream 117287 781840 ~ 972109 (+) False slc9a7
XM_021602630.2 mRNA upstream 471801 602103 ~ 617595 (+) True nit2
XM_036977160.1 mRNA upstream 592268 439965 ~ 497128 (+) False tbc1d23
XM_036978346.1 mRNA downstream 39803 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 39803 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 39803 1173711 ~ 1299441 (+) False cyfip1
XM_036978109.1 mRNA downstream 39805 1173713 ~ 1300624 (+) False cyfip1
XM_036978157.1 mRNA downstream 39805 1173713 ~ 1300624 (+) False cyfip1
TU710 other upstream 79189 1003783 ~ 1010207 (+) False G583
TU707 other upstream 80243 1003783 ~ 1009153 (+) False G583
TU206 other upstream 769422 318047 ~ 319974 (+) False G166
TU83 other upstream 959133 120466 ~ 130263 (+) True G51
TU80 other upstream 969089 112959 ~ 120307 (+) True G50
TU1201 other downstream 944990 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 944990 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 944990 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 1124975 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 1124975 2258883 ~ 2263565 (+) False G998

Expression Profile