RNA id: XM_036978261.1


Basic Information

Item Value
RNA id XM_036978261.1
length 4175
RNA type mRNA
GC content 0.51
exon number 29
gene id cyfip1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1173711 ~ 1300624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGAGCAGGCCACCGTCCACTCTAGCATGAATGAGATGCTGGAGGAGGGCCAGGAGTATGCTGTGATGCTGTACACGTGGAGGAGCTGCTCTCGAGCTATCCCACAGGTGAAGTGTAATGAGCAGCCCAACAGAGTGGAGATCTATGAGAAGACAGTGGAGGTGCTGGAGCCTGAGGTCACCAAGCTCATGAACTTTATGTACTTCCAGCGAACGGCTATAGACCGGTTCTGTGGGGAGGTGCGTCGTCTCTGCCACGCTGAGAGGAGGAAGGACTTTGTCTCCGAGGCCTACCTCCTGACCTTGGGGAAGTTCATCAACATGTTCGCTGTGCTGGATGAACTCAAGAACATGAAGTGTAGCGTCAAGAACGACCACTCTGCATACAAacgAGCTGCCCAGTTCCTCAGGAAAATGTCAGAACCCTCATCCATCCAGGAATCTCAGAACCTCTCCATGTTTctggccaaccacaacaagatcactcagtctCTGCAGCAGCAGTTGGAGGTGATTAACGGCCACGATGAGCTGCTGGCTGACATAGTCAACCTGTGTGTTGATTACTATGAGAACAGGATGTACCTGACCCCCAACGAGAAACACATGCTGCTCAAGGTGATGGGGTTTGGTCTGTACCTGATGGATGGCAGTAACAGCAACATCTACAAAATGGACGCCAAGAAGAGGATCAACCTGATCAAGATTGACAAGTTCTTCAAGCAACTGCAGGTGGTGCCTCTGTTTGGTGACATGCAGATTGAGCTGTCCAGGTACATCAAGACCAGCGCACACTTTGAAGAGAACAAGAACCGGTGGTCATGTACCTCAACAGGCAGCAGTCCTCAGTATAATATCTGTGAGCAGATGGTTCAGATCAGGGAAGACCACATGAAGTTCATCTCTGAGCTGGCTCGCTACAGTAACAGTGAGgtggtGACGGGGTCCGGTCGTCAGGAGGCCCACAAGACAGACCATGAGTACAGGAAGCTGTTTGACTTGGCTCTGCAGGGGATGCAGCTACTGTCCCAGTGGAGCGCACACGTCATGGAAGTGTACTCGTGGAAGCTGGTTCATCCAACGGATAAGTACTCAAACAAGGAGTGTCCTGACAACGCGGAGGAGTATGAACGAGCTACACGATACAACTACACCATGGAGGAGAAGTTTGCCCTTGTCGAGGTGATGGCCATGATAAAGGGTTTACAGGTCCTGATGGGTCGTATGGAGTCGGTGTTTAACCACGCTATCCGCCACACCATCTACTCGGCCCTGCAGGACTTCGCCCAGCTCACCCTGAGAGACCCGCTACGGCAGGCCATCAAGAAGAAGAAGAGCGTGGTGCAGAGTGTCCTGCAGGCCATCAGGAAGACCATCTGTGATTGGGAGACAGGGCGTGAGCCCCACAATGACCCTGCCCTGCGAGGAGAGAAAGACCCCAAGGGAGGCTTTGACATCAAGGTCCCCCGCCGTGCCGTCGGCCCCTCCAGCACACAGctGTACATGGTTCGTACCATGCTGGAGTCTCTGATAGCTGATAAAAGTGGTTCTAAGAAGACTCTCCGCAGCTGTCTGGAGGGACCCACCATCATGGACATGGAGAAGTTCCACAGAGAGTCCTTCTTCTATACTCACCTGCTCAACTTCAGCGAGACCCTACAGCAGTGCTGTGACCTGTCTCAGCTGTGGTTCAGAGAGTTCTTCCTGGAGCTGACCATGGGTGGCAGGATCCAGTTCCCCATCGAGATGTCCATGCCCTGGATCCTCACAGACCACATACTGGAGACCAAGGAGGCCTCTATGATGGAGTATGTGCTGTATCCTCTGGACCTCTATAATGACAGTGCCCACTACGCCCTGACCAAGTTCAAGAAGCAGTTCCTCTATGATGAGATAGAAGCAGAGGTCAACCTGTGTTTTGATCAGTTTGTCTACAAGCTGGCTGATCAGATATTTGCCTACTACAAGATTCTAGCTGGAAGTCTGTTGCTGGACAAGCGTCTGAGAGCGGACTGTAAGAACCAGGGAGCCAACATCCCCTGGCCTGCGTCCAACCGTTACGAGACCCTGCTGAAACAACGCCATGTACAGctgCTGGGTCGTTCCATAGACCTGAACCGTCTGATAACCCAGAGAGTGTCTGCTGCTCTCTACAAGTCTCTGGAGCTGGCCATCAACCGCTTTGAGAGCGAGGACCTCACATCCATCGTGGAACTAGAAGGTCTGATGAACATCAACCGTATGACCCACAAACTGCTGTCTAAGTTCCTGACGCTGGACAGTATGGACGCCATGTTCCGGGAGGCCAATCACAATGTCTCCGCCCCCTACGGACGCATCACACTCCATGTCTTCTGGGAACTCAACTACGATTTCCTCCCCAACTACTGCTACAACGGATCTACTAACAGgtTTGTCCGCACGGTCCTGCCCTTCTCTCAGGAGTTCCAGAGGGACAAGCCGCCCAACGCCCAGCCCCAGTACCTGTACGGCTCAAAGgCTCTGAACCTGGCGTACAGCAGTATCTTTGGTTTCTACAGACACTTTGTTGGTCCTCCTCACATCAAGGCCATGTGTCGTCTGCTGGGGTACCAGGGCATCGCTGTGGTCATGGAGGAACTGCTCAAAGTGGTCAAGAGCCTGctccagGGCACCATCATGCAGTATGTGAAGACCCTGATGGAGGTGATGCCTAAGATCTGCCGTCTCCCCCGCCACGAGTACGGCTCGCCGGGTATCCTGGAGTTTTTCCACCACCAGCTGAAGGACATAGTAGAGTACGCCGAACTGAAGACCGTCTGCTTCCAGAACCTCAGGGAGGTGGGCAATGCACTGCTCTTCTGTCTGCTCAGCGAACAGAGCCTGtCTCAGGAGGAGGTGTGTGACCTGCTACATGCCGCACCATTCCAGAACATTCTTCCCAGGGTCCATGTCAAGGAGGGTGAGCGTCTTGATGCCAAGATGAAACGCCTGGAGGCTAAATACACAGCCCTGCACCTGGTTCCTCTGATAGAACGCCTGGGAACCCCACAGCAAATAGCCATTACCCGTGAAGGTGACCTGCTGACCAAAGAGCGTCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTCACACGTGTCCGCGGTTTCCTGGACGACCCCATCTGGCGCGGCCCGTTGCCCAGCAATGGCGTGATGCACGTGGACGAGTGTGTGGAGTTTCACCGGCTGTGGAGCGCCATGCAGTTTGTTTACTGCATCCCTGTAGGAGCACACGAGTTCACCGTGGAGCAGTGTTTTGGGGacggtctccactgggctgggtgTATGATCATCTCCCTACTGGGTCAACAGAGACGCTTTGACATCCTGGACTTCAGCTATCACCTGCTGAAGGTGCAGAAACACGATGGAAAGGATGAGATCATCAAGAGTGTGCCTCTTAAAAAGATGGTGGACAGAATCCACAAGTTCCAGGTTCTCAACGATGAGATCTACGCCATTCTGAACAAGTACCTGAAGTCAGGCGACGGGGAAAATATGCCTGTGGAGCATGTCCGGTGTTTCCAGCCTCCTATCCACCAATCCCTGGCCAGCAACTGAGATTGACCATCCAATAGCATGAATCAGCAATACATTTCCTATAGCGCCATCCACTTATGTTTAACTAAGCACAAAGGTTGCATCTCAAACGTTTTATATaagtgcactacctagggaatagggtgcctttttggAGGCACTTATGAAATATTCTTCCCCcttttaaactagatgataggaacactgtggaccattttcagcaagttgaaaacAGAAATATAcgaggtctaaatcatgtttgatctttaagtatatatatttttcagaaCTGTTTAAAGCAGCAGTGCCCCAACTTTCCTTATATAATGTTTGTCAGGATGATTTTTGTGCCTTAAGTAATCAATCGCAAAACTGTGTTTCACATCTGGAACACTGTAGACCAGGGAATGATTTATTTTGGGGGTGGTGGGATATCGTTGTAGCCTGTACTCAATGAAGGGGAATTGGACAGAGTAGAGTATATTTGGTGCTAAAAACCTATCAATCTGTAAAGTAACCAAGTTTCTTAATGATAAAGCATTTATTCACTTAGCCTTTTTGTGTTGAAATTATTTTAATCATTTTCATTCAATAAATATGTAACAAATATC

Function

GO: NA

KEGG:

id description
K05749 CYFIP; cytoplasmic FMR1 interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695 lncRNA upstream 147978 988089 ~ 1045254 (+) True G571
TU709 lncRNA upstream 183025 1007382 ~ 1010207 (+) True G583
TU596 lncRNA upstream 217123 975475 ~ 976109 (+) True slc9a7
TU604 lncRNA upstream 217233 970541 ~ 975999 (+) False slc9a7
TU851 lncRNA downstream 8144 1308768 ~ 1309548 (+) True G683
TU808 lncRNA downstream 14783 1315407 ~ 1315653 (+) True G649
TU872 lncRNA downstream 35690 1336314 ~ 1348949 (+) True G696
TU874 lncRNA downstream 46382 1347006 ~ 1349562 (+) True G697
TU920 lncRNA downstream 186944 1487568 ~ 1488987 (+) True G740
XM_036978058.1 mRNA upstream 59324 1089396 ~ 1133908 (+) True tubgcp5
XM_036977980.1 mRNA upstream 221123 781840 ~ 972109 (+) False slc9a7
XM_021602630.2 mRNA upstream 575637 602103 ~ 617595 (+) True nit2
XM_036977209.1 mRNA upstream 696104 439967 ~ 497128 (+) False tbc1d23
XR_005051889.1 mRNA downstream 26698 1327322 ~ 1328266 (+) True LOC118964682
XM_021608164.2 mRNA downstream 33473 1334097 ~ 1398380 (+) True gabrb3
XM_036978985.1 mRNA downstream 159443 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA downstream 160869 1461493 ~ 1596619 (+) True atp10a
XM_036979059.1 mRNA downstream 432165 1732789 ~ 1770434 (+) False LOC110520782
TU710 other upstream 183025 1003783 ~ 1010207 (+) False G583
TU707 other upstream 184079 1003783 ~ 1009153 (+) False G583
TU206 other upstream 873258 318047 ~ 319974 (+) False G166
TU83 other upstream 1062969 120466 ~ 130263 (+) True G51
TU80 other upstream 1072925 112959 ~ 120307 (+) True G50
TU1201 other downstream 778274 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 778274 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 778274 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 958259 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 958259 2258883 ~ 2263565 (+) False G998

Expression Profile