RNA id: XM_021608164.2


Basic Information

Item Value
RNA id XM_021608164.2
length 5370
RNA type mRNA
GC content 0.45
exon number 9
gene id gabrb3
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1334097 ~ 1398380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATATTTCCGTTTAGTGAATTGTTGCTAGCTTGCCCCCGAGTCAATATGAATTCTGCTGTTCTACCAATCAGCAAAACGCTCCAACGAGCTCGCAAACTGAAGTATCACGTAACCAGGTCCatttagctgctctgtcatacaGAGAGCCAGTTTCTTCAGACTCCGGACAACCTGGTATGAACCAGTGGTGGTGGTGAGTCTCGTCTAAGGGAGAGGAAAACCTGGCAAACACCTGGTAACAACATGGATAATGTAGGCTAGATGAGTTTTGCGCACTCGGAAACGAATTGGTCTTTAATTCAaccctccccccccaaaaaaccacAGAAGTGACATTTGGACTTCTACATTGCCGTGGGTGTGATAGTCTAATAACCAATGAATGCCACGGCTTGGATAATGGAGGTTTGGATGAGTTCAAACCACGACGGGTCTCGCCGCCGCTACTGGTAACGGTTTAGGCAAAATGTTTGGTGTTCACCTAATGCGCGGTGCTATAACATCTTCCGAAAGATTTCCGACTGATGTGAAACATTTCAACTGATCTAAGATATCGGGAGCTGTTAGGTTAATATCAGAGAGCTGCTGATCAAATATAGCCATAGGTttataacgttttttttttttttacgctgGAAAACCCGTTAAACACCTGTTTAGAGTCGAGACGCGTGATCCTATGTTGGAGAGATCACAAGAAATGTTTGGGTTGCAGAGAAGAGGGGAATTTGACATTCTCTCTGTGTCACTCATAGTGGCGTTGGTGTGCTGTGCGCAGAGCGCCAACGAACCGGGGAATATGTCTTTCGTAAAGGAGACGGTGGACAAACTGTTAAAAGGGTATGATATCCGCCTTCGACCAGACTTCGGAGGCAAACCGGTTTCTGTTGGCATGAGTTTAGATGTGGCAAACATCGACATGGTGTCAGAGGTCAACATGGACTACACGTTGACCATGTACTTCCAGCAGTACTGGAGGGACAAGAGGCTGGCGTACGCTGGGATCCCCCTCAACCTGACCCTGGATAACCGGGTCGCTGACCAGCTCTGGGTCCCCGACACCTACTTCCTCAATGATAAGAAGTCCTTTGTGCATGGGGTCACCGTGAAGAACCGTATGATCCGACTGCATCCGGACGGCACCGTGCTCTACGGACTGAGGATAACAACGACGGCTGCCTGTATGATGGACCTGAGGAGATACCCACTGGACGAACAGAACTGTACTCTGGAGATAGAGAGCTATGGCTACACCACAGATGACATCGAGTTCTACTGGAAAGGGGGGGAGAATGCTGTGACAGGAGTGACTCGCATCGAGCTGCCTCAGTTCTCCATCGTGGACTACAAACTGGTTTCCAGGAATGTGGTCTTTTCCACAGGTGCCTACCCACGTCTGTCTCTGAGCTTCAAGCTAAAGAGGAACATCGGCTACTTCATCCTGCAGACGTACATGCCCTCCATCCTGATCACCATCCTGTCCTGGGTCTCCTTCTGGATCAACTACGACGCCTCCGCTGCCAGAGTGGCTTTAGGTATCACCACGGTGTTGACCTTGACCACCATCAACACCCATCTGAGAGAGACGCTCCCTAAGATCCCCTATGTCAAGGCCATAGACATGTACCTGATGGGCTGCTTCGTGTTCGTCTTCCTGGCTCTGCTGGAGTACGCCTTCGTCAACTACGTCTTCTTCGGACGGGGCCATCGGATGCAGAAGAAGTTGGCAGAGAAGGTCAACAATGACAGGGCGGCCAAGTTCGACGGCAACAGGGTAACGTTTACCCCCTCAGAAATGGTTGACTCTCAGGGCAACATCCTCCTGACAACCCTGGAGATCCACAACGAAGTTGGCGCCGGCAATGAGATCACAACCAGCATCACCGAGACAACTACACGGAACTCCACCTCCATGATATTCAACCAATCAGGCCTCCAGTACCGAAAACCGAGTGCTCTGAGTGGCCGGGAGAGGAACGCCCATGCTCACGTGAAGAAGACACGGCTACGCAGGCGGTCCTCTCAATTCATAATCAAAATCCCCAACCTGACGGACGTTAACTCCATCGATAGATGGTCACGGGTTGTCTTCCCCTTCACCTTTACCCTCTTCAACTTCATCTACTGGCTTTACTACGTGAACTAGTGGTCTTCAagcctctcctcagggacccccagccgTTCATCTACTGGCTTTACTACGTGAACTAGTGGTTCTCAagcctctcctcagggacccccagccgTTAAATTTTAGATCCACTGAACTAAGTAACAGAAGGGATTTTCACTCCTTAAACTTCTCTTGTTTCTCTAAAGAGTAAAGAAACCCATCTGTATTCGGAGGACATATGACTACGCAGTCCATACTGAGTGCAGAgaaacactactacaacactgagTTGTGGGGTCTCTTGAACTGTACGTTCAGACGAGCAGAGACAGACGCTTTGTGGAAATACTATCCTTCTGAACACTCCTCTGTACAAACAAGAGGGGGACACAGTAAATGGTATGGGGTTTTCAGAAGCGTTATTTACTTTGATTTATGCCAATTATTGTGACTCTACCCCCTTATTTTAGTGTGAGAAATTCATTGAGCTAAATTAATTCAGTATGCTATTTATCATAGTAGCCCATTATAAACTGAATGAGAAATGAATTCAGTGTGCTATTTATCATAGCCCGTTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAGTAGCCCATTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAGTAGACATTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAGTAGCCCATTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAGTAGCCCGTTATAAACTGAATGTGAAATTAATTCAGTGTGCTATTTATCATAATAGCCCGTTATAAACTGAATGAGAAATTAATTCAGTGTGCTATTTATCATAATAGCCCGTTATAAACTGAATGAGAAATTCATTCAGTATGCTATTTATCATAGTAGGCCATTATAAACTGAATGAGAAATTAAATGCACAGCCTTTGAGTCAGGATATGTCTGGTTTATCTGTTGGGATATTACCATTCCAGTCATGTCTATGTTCTATGGACTGTCAGCACAGGATCATATGTAATGTATAGGGTTGCATATGAGCTGAATATTATAGTCATGAATAGTCATTAACagtcatgaataaccatgaataGTCATTAACagtcatgaataaccatgaataGTCATGTACTGAATCACTTTTGGATACTAATTCCATTGGCTTGGGTCTGACTATTCTGCAAACGatttacttaaaaaatatatatataagtgCTAAAGTAACCTCTATGTTATCTTGATCTATATTTCACTGTACATTGGAGGCAACGTAATGTCAACTCTGCTCTCACCAACCCACACCTCAGTATCACTGTAGTTCATAGGTCACGCCTAACATCCACACTGCCAAGATAAGCATGTCATGGAACCTGAATCATCCATTTTTATTCATTAAACCAGACTTACTTTTATTCATTTTACAATAATCAATGTAAGTCATTTACCTTCCCTGAGTGAAATTATGTTTTCTGATCACAAGAAAACGTGTGTTCCGATCTGCTGTCATGCAATGCTCAATCAAGGCTTTGATGTGGGCCTTACATGTGTTGGCAATACAGTAGGCTCTGACCTTCGTCTGACCTAAACTGTACCCATATCTTTATGAATAGCCTAATGAATTTTGAATTATGTTATTTTTTACAATGTACATACATACCGTAGCCATAGAAAACACAACTCAGGTTCTGAATGGAGAGGTTCCTTATCACAATACACATGATCTATTGTCTGATTGTGTTATTACACAGTATTCCTATACATTTCCCTATGATTGGTTTATAATGTAGCCATACTATATACTACACATGACTACTGCTTTATAATTTCTCAGTGAAGTATCCTGTCCTTTAAGATCTCAGAGAACTGACACTAGGGGTTCTGCTCATACACACTACAACAACATCCCCCTGGTCCAAGACAGACATCGCACATTAGAGgctctgtatagggaatagggtgctgtttgagaTGCAGACTTTACACTAGACCACCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCCCCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGACCCCCCTACAGAGTCTCTACCACCCTACAGAGAGTCTAGACCCCCCTACAGAGTCTCTACCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGACCCCCTACAGAGAGTCTAGACCCCACTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCAACCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGGCCACCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACTCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACTCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCCTTCCATAGAGTCTAGACCCCCCCTATGGAGAGTCTAGACCCCCCTTCCATAGAGTCTAGACCCCCCTTCCATAGAGTCTAGACCCCCCTAAAGACTCTAGACCCCGAAACAGAGAGTCTAGACCACCCTACAGTCCATACCCCCCTACAGAGAGTCTAGACCCCCCTACAGAGAGTCTAGACCCCCTACAGACAGTCTCATTTTGAGTGTGATTCCATATTTAGGCTAGTTGAGCTGGGAGCATTGAGCATGATTGCAGAGAGTAAGCATGCCATAGAACCCTAATCATCTGTTTTTATCCATAACAGAGACTTACCTTCATTCATTTCACATAATCTTAATCATTAACTTCCCTGAGTGAGTAGGACATGAAAACACTTTTAAATTAAACTTAgtgtttaaaaaaacattatgAAACATGCATACAAATGGTTATTTTGTCAATAGTACAACAATTTGAATAAAGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU808 lncRNA upstream 18444 1315407 ~ 1315653 (+) True G649
TU851 lncRNA upstream 24549 1308768 ~ 1309548 (+) True G683
TU842 lncRNA upstream 65737 1267352 ~ 1268360 (+) True G678
TU843 lncRNA upstream 66016 1267396 ~ 1268081 (+) True G679
TU836 lncRNA upstream 79350 1253014 ~ 1254747 (+) True G674
TU920 lncRNA downstream 89188 1487568 ~ 1488987 (+) True G740
TU925 lncRNA downstream 97193 1495573 ~ 1496694 (+) True G745
TU951 lncRNA downstream 157882 1556262 ~ 1556636 (+) True G767
TU952 lncRNA downstream 159011 1557391 ~ 1558371 (+) True G768
TU955 lncRNA downstream 168245 1566625 ~ 1567020 (+) True G771
XR_005051889.1 mRNA upstream 5831 1327322 ~ 1328266 (+) True LOC118964682
XM_036978109.1 mRNA upstream 33473 1173713 ~ 1300624 (+) False cyfip1
XM_036978157.1 mRNA upstream 33473 1173713 ~ 1300624 (+) False cyfip1
XM_036978210.1 mRNA upstream 33473 1173713 ~ 1300624 (+) False cyfip1
XM_036978261.1 mRNA upstream 33473 1193232 ~ 1300624 (+) True cyfip1
XM_036978985.1 mRNA downstream 61687 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA downstream 63113 1461493 ~ 1596619 (+) True atp10a
XM_036979059.1 mRNA downstream 334409 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 334414 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 334425 1732805 ~ 1770434 (+) False LOC110520782
TU710 other upstream 323890 1003783 ~ 1010207 (+) False G583
TU707 other upstream 324944 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1014123 318047 ~ 319974 (+) False G166
TU83 other upstream 1203834 120466 ~ 130263 (+) True G51
TU80 other upstream 1213790 112959 ~ 120307 (+) True G50
TU1201 other downstream 680518 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 680518 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 680518 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 860503 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 860503 2258883 ~ 2263565 (+) False G998

Expression Profile