RNA id: XM_036978913.1


Basic Information

Item Value
RNA id XM_036978913.1
length 8527
RNA type mRNA
GC content 0.49
exon number 21
gene id atp10a
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1460067 ~ 1596619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGTGTCAGTAGTGACGGCCCtgtgtcccctcctctctctctctctctgcgcacaATCTGCACAGATCCCAGGCTTTTTAAACACATGGCCCCGGACTTTGCCACGACATCCCAAAGTCAAAGTCTATCCATGTGTTCTACAACTCACCGACTGAACGGCAAAAGTTCTGTTCTTCACAACTATGCCCTCTAGCTTTCCGAAGCATCTCTAAACggcaaaatgaaaacatgttaaTAGTATAATGCTTTCGTCTGAATACGGGAAATCGAGGTAGATGATAGTAAAGAAGAGATTAGCGTGAAAACAGAGAATAATACAATGTCATTCTGAAGGTATGGAGCTCCATAATTACATAGGACATTTCTATGTTTAAAAAacgttaaaaaaaagaaaaggaaaagtTTGGGAGAGTTTGAGGCAAAGTATGGCGCGAGAGAAGATTGGAGAAACCGAAGTGGTGAACGTGAAGAAACAGAGGAAAAAGACCAAGAAAGAGCACAAAACACGGACTGTTCATTCTAACATTTTATATGATCGAACCAAAGGCGAGGACAACCCAAATAGACACTATTCAGACAATGAGATTAAAACCACAAAATATACTCTTCTCTCTTTTCTGCCGAAGAATCTGTTCGAGCAGTTCCATAGGTTTGCCAACGTATACTTCGTGTTCATCGCCCTGCTGAATTTTGTTCCAGTTTGTAATGCTTTCCAACCACAGCTGGCCCTGGCACCAGTGGTCTTCATCTTGTCTGTCACTGCCATCAAAGACCTTTGGGAGGATTACAGAAGACACAGATCCGATAAAGAAATCAACCACATGGATTGTTTGGTCTATAGCAGGCCAGAGCACCAGTACATGGAGCGGTTCTGGAAGGAGGCGCGTGTTGGGGATTTCATTAGACTGCGCTGTAATGAGATCCTGCCTGCAGATGTTCTACTGCTCAGTTCCAGCGACCCGGACCGCCTGGTCCACATCGAGACAGCTACCCTGGATGGAGAGACCAACCTCAAACAGAGACGGGTTGTCTGCAGCTTCCTAGACCTGGATTGTGATTTTGACCCGTCCAAATACAACAGCGTCATAGAATGTGAGAAGCCTAACAATGACCTGGCCAGGTTCCGTGGCTACATTACCCATCGCAGTGGAAGGAGAGATGGCCTGTACAAAGACAACTTGCTGCTGAGGGGCTGTACCATCCGCAATACAGAGGAGTGTGTGGGGATCGTCATCTACGCAGGTCACGAGACTAAAGCCATGCTGAACAACAACGGCCCTCGCTACAAACGCAGTAAACTGGAGAAACAGATGAACGTGGACGTGGGCTGGTGCGTCATCATCCTATTGGTCATGTGCCTGCTCTCTGCTATCGGTCATGGCTTGTGGATGTATCAGTACGGAGATAAGAGACCCGTGTTTGATGTCCTTAGTCCTGAAGGAGCCGAGCTGTCACCTGTCCTGTCTGCCGTCTATCTCTTCCTCACCATGATCATCGTCTTTCAGGTCCTGATCCCCGTCTCGCTGTTCGTGTCCATAGAGATTGTGAAGATCTGTCAGGTGTATTTCATCCATCAGGACCAAGACCTGTACGATGAGGAGACTGACTCTCATCTGCAGTGTAGAGCTCTGAACATCACCGAAGACCTTGGGCAGATGCAGTACATCTTCTCTGACAAGACCGGAACACTCACAGAGAACAAGATGGTGTTCAGGAGATGTACGGTGGCCGGGGTGGAGTATAGTCACGATGCCAACGCGAGGCGTCTGGCCATGTACCAGGACCTGGTGGACTCAGAGGAGGAGGACTGTACGTCCCACAGTGGCACCTTGCCCAGACGGGACAGCGTCACCAGCAACCAGAGTGCTGCCAAGGTGGTGCTGCGCTCCCAGAGCACCAAGTCCCACCGCAGGACTGGCAGCCGGGCCGAAGCCAAGAGGGCCAGCATCCTGTCCAAACACACTGCATTCAGCAGCCCCATGGAGAAGGACATCACCCCTGACCCTCAGCTCCTGGAGAAAGTCAACCACTGCAGCAGCCAGATGACCTTCAAGAGGTTCCACAGCCAGTCCCTCTCTCAGCTGCCCTCTGACCTCACGGACATCATCGACTTCTTCATCGCCCTCACCATCTGTAACACAGTGGTGGTGTCATCACCCAATCAGCCACGGCAGAAGgtgcgGATGAGGTTTGGGCTGAAGTCCCCAGTGAAGACTATCGAGGACTTCATCAAGCGCTTTACCTCTAGCCGTCTCACCTCCAACTCCAACAGTAGCAGCTCTTCCAGCCTCAACCGCTCCTCCCACCGTGAATGTTCcagtgtcctctcctccccctcagccGAGAGCACCCTGACTAAATTAGATGAGGAGCATCACCTTGGAGGTTCGGTGGGTTTGGAACATGCCTTCTCCCCCGTCCCTCCTCACACTACCGAGGGAGAGCCCGGGGCCCTAGAGGAAGGAGAGCTCCGCTACGAGGCAGAGTCACCTGACGAGGCTGCCCTGGTGTATGCGGCGCGTGCCTACAAGTGTTCTCTGGTTGGCCGGCTACCTGATCAGGTGACGGTGGAGCTACCTGACCTGGGGAAGCTAAGCTTTGAGCTGCTCCACACTCTGGGGTTTGACTCCACCAGAAAGAGGATGTCTGTGGTGGTGAGACACCCGCTAACAGATCAGATCACCGTCTACACTAAAGGAGCTGACTCTGTCATCATGGACCTCATCACACTGCCATCTACAGATGATTCCAAAGGGAAACGCCAAAGAAAGATCCTATacaagacccagaattacctgaACCTCTATGCTGCTGATGGTCTTCGTACTCTCTGCATCGCAAAAAAGGTTATGACTAAGGAGGAGTATGCTGTCTGGTTGCGACATCATCTGGAGGCAGAGACGGCCATACAGGGAAGAGAAGAGCTGCTGTTTCAGTCTGCTCTGAGACTGGAGATTAACCTGCATCTATTAGGAGCAACGGGTGTAGAGGACCGTCTACAAGATGGTGTCCCAGAGACCATTGCGTCGCTGCGGAAGGCAGGGCTCCAGATCTGGGTTCTGACGGGGGACAAACAGGAGACAGCCATCAACATCGCCTATGCTTGCAAGCTGCTGGAACCTGACGACGAGATCATCACACTCAACGCTGACTCTCAGGAGGCGATGGCAGTCCTTCTAGAGGAGAGTCTACACTACATCCAGGCTAAGTTCCTGTCCTCGGATCCTTCCAGATCCTTTCAGAAAGACTACGCTCCAGCCTactccttcccccctcctcctcctccctccccctcctcctcccagacCCAGTCCTTCCTGGTGCACCGGCTGGGTTTGGTGATTGACGGGCGGACGCTGGCCTACGCGCTGGACAGCAGCCTAGATGAGAAGTTCCTGGCGGTGGCGAGGAGCTGTCGGTCAGTCCTCTGCTGTCGCTCCACACCACTGCAGAAGAGTATGGTGGTTAAACTGGTCCGGAACAAACTGAAGGTCATGACACTGGCCATAGGTGATGGGGCTAATGATGTCAGCATGATTCAGGTGGCTGATGTGGGCGTCGGCATCTCAGGACAGGAGGGCATGCAGgctgTGATGGCTAGTGACTTTGCCCTACCGCGTTTCCGGAACCTTCAGAAGCTCCTGCTGGTCCATGGTCACTGGTGTTACTCCAGACTGGCCAACATGATACTGTACTTCTTCTACAAGAAcgctaTGTTCGTAGCGCTGATCTTCTGGTACCAGTTCTACTGTGGTTTCTCTGGGTCAGCCATGATAGACCAGTGGTATCTGATCTTCTTCAACCTCATGTTCTCTGCCTTCCCTCAACTCATCACCGGTACCCTGGATAAAGATGTATCCTCAGAGACCCTCCAAGAACTGCCTCAGCTCTACATGAACGGACAGAACTCAGAGGAATACAAGCCATATATGTTCTGGATGACCATGATAGATGCCTTCTACCAAAGCCTGGTGTGCTTCTTTATACCCTACTGTGCCTATGCTGACTCTGATGTGGACTTGTTGACCTGGGGAACCCCCATCACCACCTTGGCTCTGTTTACTATACTGATACACCTGGGCTTGGAGACCAAGACCTGGACGTGGATGAACTGGGTGTCCATCACCTTCAGTGTGGGTCTGTTCTTTACTGTGGCTCTGTGTTACAACGCTTCCTGTCCCACATGCTACTCCCCCTCCAACCCTTACTGGACCATGCAGAGACTGCTGGGGGAACCGGTCTTCTACCTGCTCTGTGTCATCACTCCTGTAGCCGCCCTGCTGCCCAGATACTTCTACAGGGCGTGTCAGAGCTCTCTGTTCCCCACTCCAGTCCAGGTCGGCAGGCAGCTGGACAAACTGCCCAGTGACACCCGTAGAAACATCCTCAGTCTCAGCCGAGTCCAGGCCGGGTCACTTCTGCATCTCAGACCGCCCTTCCTGTCTTCACTTTCCTTCACTGGACCCTTGACTAAAGACTGCAGCCACAGGGCCACTTCCACACAGAACCAGTACAGCTTCACCAGGGGCCCGGCCAAGAGTCCTGAGGGCCGTCTGGACCTGTCCTTACGGGGGGATGAGGCTGGGAAGGATCAGGGGAAGGGCTGGGGCTCTGGCAGTCCTGGAGACAGTCAGAGGAGGCTTGAAGATGATGATCAGTACACACTGGCCTCCACAGAGACTGATACTCTGCCGTATACCAAAGCCAAAGAAGCTCCTCGGCCTGAGGCAGGGTTTATGGCTGGAGCAGGGGCCGGGAGTATGGCTGGAGCAGGGGCTGGGAGTATGGCTGGAACAGGGGCTGGGAGTATGGCTGGAACAGGGGCTGGGAGTATGGCTGGAACAGGGGCTGGGAGTATGGCTGGAACAGGGGCTGGGAGTATGGCTGGAGCAGGGGCTAGGAGTATGGCTGGAGCTGGGAGTATGGCTGGAGCAGGGGCTGGGAGTATGGCTGGAACAGGGGCTGGGAGTATGGCTGGAACAGGGGCTGGGAGTATGGCTGGAACAGGGCCTGGGAGTATGGCTGGAACAAGGGCTGGGAGTATGGCTGGAGCAGGGGCTAGGAGTATGGCTGGAACAGGGCCTGGGAGTATGGCTGGAACAGGGGACGGGCCTGATTACCTTCAGGCTCCTCTCACCCAGGACAATGACTGTCAGGACATTACTCTTCTTGATCCCTCGGACCTAAATCTGTCCAGCTTTATCACCTCCACACCCCTTCTGACCACAACCCAGTCAGAGACCATCCAACTGACTCTGCCCCCTGCTGGTGGTTCCCAGTCTGCAGCCTACAGACGGAACTATGAGAACCATGACACTACGCCACACAGACCACCTGACCACAGGCTCCTCCCTCCTACAGACAGACCAGAACACCCCCAGGCCACGCCTACCTGTCCTAAAGAAAACGTGTGGCTCCAAACCACCTCTCTATGATGTATTATAGCCTTAATATCTATGTATTGTTCTTCTCAGATTTACATGATAGCTCTATTGAATTCTATTTTTCAAGAGGATTTATTTTATCAAagttattatcatcattattcatgTACATTTAGATGTTTTATGTTATAGGTCCAATAGCAGCCGCTTTCATCtccatatcaaatcatttctgggtaacaattaactaCCGTAactgattgttttcaattaaaagggtcaaaaagaaacatatcaatttctcaagcaagaatttagctaggactgtctgggagtggtttgagtggggaggggaatactagaactctttcttattggtctgttaactcatttaccgcatggtgatgtcaccaggcaggtcaAAACGACATCCCACCAAACAGGCTGAAATTtgaggcggtcttttcaaacagcttttacactaaaagggcattattatgattttcacaatttcacagtattattccaatatCATAGTATGGAAATATACACTCACTGGACAGTTTATTGGGTACACCCATTTAGTACCGagtcggacccccctttgcctccagaacttTGTGTCTTTGTGGGCATGGATTCTAAAAGATGTTggaaacattccacagggatgttggcccatgctGAGATGATGGCATCGCATAGTTGCTGCTGATTGGACAACGGTACGTTCATGCTGCCAGCGGCCTGCTCCTTCTCATCCCAAAGGTACTCTATTGGGTTTGGACAGCAACAATGTTCACATGCTGTGGCCTTCAATccttgctcaattggtatcaagggacctaaatGTGTGCAAGCAAAACATTCCCAACAGCGCCATCTTGTACCATTGAGACCAGGCAGGATGCTGACTCTGCCATGAGCATGACGCTACAGAAATCGTGTTTCGACGGACCAGGCGATGTTTCCACTCCTCAAATTGTCCAGTGTTGTTGCCCACTGGAacctcttcttcttgtttttatctGATGGGAGTAGAACCCGGTGTTGCAATAGAACCATCCGTGACAAAGGCCGACGAGTTGTGCGTTTCCGAGAtgctgttctgcacaccactgttgtactgtgtCGTTAAtggtctgtttgtggcccgcctgttagcttgcacggttcttcttcgacctctcatcaacgagctgttttcacccacaggactgtcgctgactggatgtttttgttAGTCGCACCATTcttggtaaaccctagacactgtcatgtgtgaaaagcccaggagggcagCCGTTTCTGACATACTGGATCCGGCGTTGTGATCCACTTTTGTGAACATGGTGTTGTACCTATTAAACTGGCTggtaaaacacagggaaatcacgtttttgactgcactgggcctttatataaaaatacaaaacattcaGAGTAGAGTTTATACAACTGGATTTTCTGTGTGTATTATCATTTTGGGAAGAAAGCTGTCCGTTATGTGAATACTGGAAGGGTTTGTTTGAAACCAGAGAGCAAGACCACACAGGCTTTCTGTTATCAGTGTGTTTGGAATGATTTCTTGTCTCTGATAGGAAGGGAAGCACAGAGCTGCTGTTCTGCTTCGTATCCATCCCCTCAGCCTGGTAACCTATTGACTGTGTACCAAAGTGCCGTTGCTCTTCAATCTTGTTAATAAGAATAATTAGCTGGGGGTTTATTTCttctatttcacacatgtacaagacTGTATTATTACacatgtgaattggaaatgtatttttttgcacATCCCCCTGAGACACATCCTCAGAGTGTGGTCAAGGCCTGGGATATTAGCCATTAATGATGGTGACCCTGGACAACTCCCCGTGAGACACAGCCTCAGAGTGTGGTCAAGGCCTGGGATATCAGCCATTAATGATGGAGACCCTGGACAACTCCTCCTGAGACACAGCCTCAGAGTGTGGTCAAGGCCTGGGATATCAGCCATTAATGATGGCGACCCTGGACAACTCTGGACAACAATTCGagccagcgacctttcggttactggctcaacacgcTTAACCgcttaggttcctgcctttcagTGTTCCTCCTTAATGTACTGTGAGCAGGACTTGATGCAGGGCTTGATGCAGGGCTTGATGCAGGGCTTGATGCAGGGCTTGATGCAGCCAATGCTACCTGCTTGTTTAGAAGTCTGCTTTTCAGAAGCAATGTGCCTTTAACAGTATGCTTGAAAATAAATCAACGTGACTCTGGATgaaaacataatgatgtttgtttccaacattagggctgttttcctaaagaagttagaTTTAGTTTCGTTGTTTTGCTTCCTTGCTTGTGTCTTCCCGGGCCCTATGAGTTACCTGttattgtgtcccaaatggcaccctattctctgtaTAGTGACCTATATTTGACCAGGACTcattgggaatagggtaccattgaGAACTAAAAGTTACTTAGTTAGCGCTATTGAGATTATCGCTGCGGTAGTTTTCCTACTTTAACCTCAATGTAATCCACTGTCACATTCCAATATGCAGAGAACTCTGTAACAAGTCATAAAATACACCAAGAAGTGGATTTAAAACTATTTTTGAATGATGTTTTCCTTTTCACAGTTGATGTAAAATGGGTAATTCTGTATGACAttcttacaacaacaacaaaaatgttccTATGCTCTTTGTCTTGTTGTAGAATATTGACATGGAAGAGTTAATTGCAACCATACCAAAGCCAAATCTTTTGTTACTCAACGTTATTATATTATTAAGTTTAGATGAAGTTAAACCATCTCAAAAGTGTTGTCAGTGTCCATATTGTGATGCTCTCTTTAAGCCAAATACACACAAAGGAAGTGCTTGTTCCTGAATTGCAGGGACGTTTTAAGCAGTCTATGGTTTTCTTGATGTTTTTAAAACGACTGTTTGCTGCCTTTGTCTTTTCATAAATCAGACCAGCCTTTTATCAAATGTTCCTTTATGTGCCAGGAAGTGTGCCTTAACACTGGATTAATTAAATATATTTCTTCATACATGTTCATCATATTGTTCAGTTAATTGAGAAGGATAACAAATAAATGAATCgtttttcttaatgttttttaAACAGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874 lncRNA upstream 111931 1347006 ~ 1349562 (+) True G697
TU872 lncRNA upstream 112544 1336314 ~ 1348949 (+) True G696
TU808 lncRNA upstream 145840 1315407 ~ 1315653 (+) True G649
TU851 lncRNA upstream 151945 1308768 ~ 1309548 (+) True G683
TU843 lncRNA upstream 193412 1267396 ~ 1268081 (+) True G679
TU998 lncRNA downstream 21649 1618268 ~ 1640955 (+) False G792
TU981 lncRNA downstream 22253 1618872 ~ 1623814 (+) False G792
TU987 lncRNA downstream 22253 1618872 ~ 1623814 (+) False G792
TU990 lncRNA downstream 22253 1618872 ~ 1660141 (+) False G792
TU996 lncRNA downstream 22253 1618872 ~ 1660141 (+) False G792
XM_021608164.2 mRNA upstream 63113 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 133227 1327322 ~ 1328266 (+) True LOC118964682
XM_036978157.1 mRNA upstream 160869 1173713 ~ 1300624 (+) False cyfip1
XM_036979059.1 mRNA downstream 136170 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 136175 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 136186 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 136186 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 140126 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 451286 1003783 ~ 1010207 (+) False G583
TU707 other upstream 452340 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1141519 318047 ~ 319974 (+) False G166
TU83 other upstream 1331230 120466 ~ 130263 (+) True G51
TU80 other upstream 1341186 112959 ~ 120307 (+) True G50
TU1201 other downstream 482279 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 482279 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 482279 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 662264 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 662264 2258883 ~ 2263565 (+) False G998

Expression Profile