RNA id: XM_036979098.1


Basic Information

Item Value
RNA id XM_036979098.1
length 3920
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110520782
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1732789 ~ 1770434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGGGATACACCTCCGTGTTGACACAAAATGGTCGAGTATGTTTTGTGACCCGGGAGTTTAGCAGGCCAAAAAGTTGTACCTTATCATTCGGCACGCAGAACATATGTTCGAATCGTAAATAGTAGACCGTTGCCTACATCAGAGGACGTGAAAACAAGCCGAATGAAGAGAGCGGCTGCAAAGCATCTAATTGAGCGCTACTTTCGGCAGTTAACAGAGGGCTGTGGAAATGGGGCCTGCACGAATGAGTTGTGTGCTTCGTGTCTTGGTTTTCAACCGCTGGATCACAACGCGGCGGCCATCAGAGCCTTGGAGCTCTATAAAATTAACACCAAATTATGTGACCTTCACCCCTCCGCTGCCTTCCCTGACAACAGTGCCGAGGACACACAACCTGCCTTATTGGGCGACTGCCACGGGAAGATGACAGACAACCTGTTTCCCCCTAGGGAGGACTTCAGAGAGGTGCGTTACCTGACCGAGGAGAAGGTGTATGAGATCCTGAGTATTTGTGAGGGGAAGAAGGACTACTCTCCTCTGATCCGAGTCATCGGGAGGATCTTCTCCAACGCTGACGGGCTGGTGCAGAGCTTCAGGAAAGACAAGGAGCAACACCCCAACACCAAGGAGCAGCGTAAGACCCACCAGGCCAAAGATGAGGACAAGGACGAGGACGACAAGGAGAGAACCACCGCCATGGAGCAGGAATCAGAGGCCTCGGCGTCCATGGAGGGAGCGACGGGATCGACGGAGAACAGACTGGGTCCTGTGGAGGTCTCAGTGGACATAGAAGCTGTGAGGAGAGTGTACAACAGACTCCTCTCCAACGAGAAGATGGAATCGGCCTTCCTCAACGCCCTGGTCTACCTAACTCCCAATGTAGAGCTGGATCTAACCTATCTAGACGTGTACGACACCAACCCAGACTACCTAAACATCTTCATCATCGTGATGGAGAACAGCAGCCTCCACAGCCCAGAGTACCTGGAGATGGCCATGCCTCTGTTCTGTAAGTGTATGAGTAAactccctctgcctgccctggccAAGCTGACGCGCCTGTGGTCTCAGTACAGTGTAGAGCACATCAGACGTATGATGGAGACCTTTCAGCAGCTCATCACCTACACGGTGATCAGCAACGAATATGTCAGCGACAGTCTGGTAAACGACGACGAGGGCGTTGTGGCGGCCACCAAGTGTCTGAAGCTGGTGTTCTACGCCAACGTGCTGGGAGGTGACCTCGATACGGGCCACAACGAAGAGGAGGAGGAGGAGCCCCCGTCCAGCGAGCTCACCCTGCAGGAGCtcttgggggaggagaggaggaacaagaACGGTCCCCGGGTCGATCCTctggagaagGAGCTGGGCGTCAGGACCCTGGACTGCAGACGACCCCTCATCCCCTTCGAGGAGTTTGTCAACGAGCCTCTGAACGACGTTCTAGAGATGGACAAGGACTTCACCTTCTTCAAGGTGGACTCTGAGAGTAAGTTCTCCTTCCAGAGCTGTCCCTTCATCCTCAACGCCTGCACCAAGAGCCTGGGACTGTACTACGACAACCGCATCAGCATGTACAGCGAGAGGAGGATCACAGCGCTCTACAGCCTGGTACAAGGACAGCAGCTCAACCCATACCTCAGGCTCAAAGTACGCCGAGACCACATCATCGACGACGCCCTCGTCAGGTTGGAGATGATCGCCATGGAGAACCCTGCGGACCTGAGGAAGCAGCTGTTTGTAGAGTTTGAAGGAGAGCAGGGCGTTGACGAAGGGGGGGTCTCTAAAGAGTTCTTCCAGCTCGTCCTGGAGGAGATGTTCAACCCTGACATTGgCATGTTTACATATGACGAGTCCACCAAGCTGTTCTGGTTCAACCCACCCTCTTTGGAGAATGAGGCCCAGTTCACCCTGATAGGCATCGTCTTGGGCCTGGCCATCTACAACAACTGTATCCTGGATGTTCACTTTCCCATGGTGGTCTACAGGAAACTGATGGGGAAGAAAGGCACCTATCTGGACCTGGCAGACTCACATCCGGTTCAGTACCAGAGTCTGAAGGAGCTGCTGGACTATGAGGGGGATGTGGAGGAGGACATGATGATCACCTTCCAGATCTCACAGACAGACCTGTTTGGAGACCCCATCACTTACGACCTGAAGGAAAACGGGGACAAGATACCTGTTAGTGCGGACAATAGAAAGGAGTTTGTCTCTCTGTATAGTGATTACATACTTAATAAGAGTGTGGAGCGCCAGTTCAAAGCCTTCAGGAGGGGCTTCCAGATGGTCACCAACGAGTCGCCTCTCAAGTGTTTATTTAGACCTGAGGAAGTGGAGCTACTGATCTGTGGAAGCAGGAATTTAGACTTTCACGCACTTGAAGAAACAACAGAGTATGACGGAGGCTACAACAAAGACTGTCGCATTATCAAAGACTTCTGGGAGACGGTGCATTCGTTTGGTGAGGAGGATAAGAGACTGTTCCTCCAGTTTACTACGGGGACTGACAGAGCACCCGTAGGAGGCCTGGGCAAGTTAAAGATGATCATCGTCAAGAACGGCCCCGACACAGACAGgttacCTACTTCTCACACGTGTTTTAATGCCTTGCTGCTCCCTGAATACGACACAAAGGAGAAGCTGAAGGAGAGACTTCTCAAAGCCATCACTTATGCCAAAGGATTTGGAATGCTGTGAAACAAAACAACTACTCTGAAACAAAACAGAAAGTTAAATGGTTTAAATGTGTTAATGGATAAGGAAGGAGTTCTACCATACAATGAGACATGAGTTCAAATTAAAAAGTGGCATTACGACAAGGAAATGTTCCAGTAGTGTGTGTGCCAAGATATCAATTACAGACGCTTTGATCTACCCCCCCTCAGATCTCTTTAATGTAGAACCTAATTTGTAGCTATTTAAAATAGTTTAAATCAGTCAGAATGCTTAGTGAAGCAGAATGCTTAGTGAAGCAGAATGCTTAGTGAGGTTATTCTACATGTGTTCATTAAAGATGGTTGCGTGTAAAAGCAGGTTATCATTGTCTCTGTTGGGAAAGGGCACTTAACTAAACTTTCAGAATGTTAGTGAATTGTATGTACAGGACTGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATATACAGGACTCTATGTTAGTGAATGGTATGTACAGGACTGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATGGTCAGGACTGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATGTACGGGACTGTATGTTAGTGAATGGTATATACTGGACTGTATGTTAGTGAATGGTATGTTAGTGAATGGTATATACTGGACTGTATGTTAGTGAATGGTAAATACTGGACTGTATGTTAGTGAATGGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATGTACAGGACTGTATGTTAGTGAATGGTATGTTAGTGAATGGTATGTACAGGACTGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATGTACGGGACTGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATGGTCAGGACTGTATGTTAGTGAATGGTATATACAGGACTGTATGTTAGTGAATGGTATGTACGGGACTGTATGTTAGTGAATGGTATATACTGGACTGTATGTTAGTGAATGGTATGTTAGTGAATGGTATATACTGGACTGTATGTTAGTGAATGGTAAATACTGGACTGTATGTTAGTGAATGGTATGTTAGTGAATGGTATATACAGGACTATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001 lncRNA upstream 6985 1695529 ~ 1725820 (+) False G792
TU1006 lncRNA upstream 6985 1700764 ~ 1725820 (+) False G792
TU982 lncRNA upstream 6985 1707301 ~ 1725820 (+) True G792
TU1022 lncRNA upstream 8749 1711284 ~ 1724056 (+) True G805
TU1016 lncRNA upstream 10522 1697646 ~ 1722283 (+) True G799
TU1071 lncRNA downstream 40234 1810668 ~ 1811153 (+) True G848
TU1134 lncRNA downstream 126332 1896766 ~ 1897519 (+) True G901
TU1162 lncRNA downstream 207673 1978107 ~ 1978417 (+) True G927
TU1173 lncRNA downstream 240508 2010942 ~ 2044901 (+) True G938
TU1178 lncRNA downstream 248656 2019090 ~ 2019513 (+) True G943
XM_036978985.1 mRNA upstream 136186 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA upstream 136186 1461493 ~ 1596619 (+) True atp10a
XM_021608164.2 mRNA upstream 334425 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 404539 1327322 ~ 1328266 (+) True LOC118964682
XM_036978261.1 mRNA upstream 432181 1193232 ~ 1300624 (+) True cyfip1
XR_005052028.1 mRNA downstream 88943 1859377 ~ 1966290 (+) False tmem131
XM_036979332.1 mRNA downstream 88944 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA downstream 88944 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA downstream 88980 1859414 ~ 1967576 (+) True tmem131
XM_036940834.1 mRNA downstream 213892 1984326 ~ 2098678 (+) False nme7
TU710 other upstream 722598 1003783 ~ 1010207 (+) False G583
TU707 other upstream 723652 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1412831 318047 ~ 319974 (+) False G166
TU83 other upstream 1602542 120466 ~ 130263 (+) True G51
TU80 other upstream 1612498 112959 ~ 120307 (+) True G50
TU1201 other downstream 308464 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 308464 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 308464 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 488449 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 488449 2258883 ~ 2263565 (+) False G998

Expression Profile