RNA id: XM_036940834.1


Basic Information

Item Value
RNA id XM_036940834.1
length 1677
RNA type mRNA
GC content 0.47
exon number 12
gene id nme7
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1984326 ~ 2101039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGTCGCAAGGGGTCATAGTTGTACTTCCGGAaacaacattattattattattgttttgcATTCGTTGCTAATTCTGTGCTAATTTGCGTCCTATATTTATGTAAAAGCCTCCAAGTTATTTATTTGTTGTTATAAAAATATTGTTTTACCCGTGTTAAACATTTCTGCGCATGTTGCTATGGTGATATGTTGTACAacgaagctaactagctaactgcTACAATAGCCACACGAACTGTCGTCATCGGGGATCTCTAGCTAAAATAATGGAGGAGCGTTTTGCCTTCCTGGCAGAGTGGTATGACCCCAGTGCTGCTCTCCTGCGCCGCTACCAGCTGCTGTTCTACCCCAAAGatggctctgtggagatgTTTGATGTGAAGAACCAGCGTACCTTCCTGAGGCGGACCAAATACGATGAGCTTCACCAGGAGGACCTGTTTGTTGGAAACCGTGTGAACGTGTTCTCCCGTCAACTCGACCTGATTGGATATGGAGACCAGTATACAGGAAACAAGCTCGGCAGCAAGAAAGAGAGAACTCTTGCTATGATAAAACCAGATGCAGTCAACAAGATGGGAGACATTCTACAGATGATCAATGACGCCAACCTGATCCTAACCAAAGCCAAAATGACAAAGCTGACATGGAAGCAGGCAGCAGACTTTTACACTGAACATCAGTCAAAGTCTTTCTTCAACAACTTGGTGCAGTTTATGACCTCTGGCCCTGTGGTTGCCATGGAGCTGATGGGCGACGAGGCAGTGTCAGTGTGGAGAAGGATTCTAGGCCCCACTGACTCGGGCGTAGCAAGGAAAGAGGCCCCACCAAGCCTGAGAGCTCAGTTTGGCACAGATGGCACCAGAAACGCTGGACATGGGTCTGACTCACTGGCTTCAGCAGCAAGAGAGCTGGAGTTTTTCTTCCCATCCACAGCGGGCCATGGTCCCGCTAACACGGCCAATTGCACAGACTGTTCCTGTTGCGTCATCAAACCTCACGCTATATCAGAAGccctgACAGGAAAGATCCTCCACTCCATCTCAGCAGCAGGTTTTGAGATCTCAGCCCTGCAGATGTTTAACATGGACCGGGCCAACGCAGAGGAATTCCTGGAAGTTTACAAAGGGGTTGTGACCGAGTACCCTAACATGGTGGCAGAGCTATGTTCTGGACCCTGCATGGCCCTGGAGATCAGAGGGACTGACGCCCCGAAGACCTTCAGGGAGTTCTGTGGACCAGCTGATCCGGAGATTGCTCGTCATCTTCGTCCCGACTCGTTAAGAGCTCTGTATGGCAAAACCAAAGTTCAGAATGCTGTCCACTGCACTGACCTCCCCGAAGACGGGATACTGGAGGTCCAATATTTCTTCAAGATTTTGGATGGATGAAGATTATTACACAAATGCACATTCCATTTCTATGAGTATGTATTGAAATAAAAGAGACATTGACCACAGGATAATTTCTCAATTTATTTGTCTTTAAGGTCTTACCCAGATGGACTCCTGACGAGTGTCTGGATGTTCAACATTGATCACTTTTACACCAACAAAACCTCCTATTACACAGGGTACTGCATTGCTTCTGATATTCTAACTTTTTGACCAGCGACTTTGGTATCGGATCCATACATTACACTTTTTCCTGCgggaaaaaaaaaattgtacaacTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1162 lncRNA upstream 5909 1978107 ~ 1978417 (+) True G927
TU1134 lncRNA upstream 86807 1896766 ~ 1897519 (+) True G901
TU1071 lncRNA upstream 173173 1810668 ~ 1811153 (+) True G848
TU1056 lncRNA upstream 215961 1767838 ~ 1768365 (+) True G836
TU1042 lncRNA upstream 233115 1739281 ~ 1751211 (+) True G824
TU1078 lncRNA downstream 20233 2118911 ~ 2130795 (+) True G853
TU1218 lncRNA downstream 21213 2119891 ~ 2121267 (+) False G971
TU1219 lncRNA downstream 21213 2119891 ~ 2122724 (+) True G971
TU1221 lncRNA downstream 24867 2123545 ~ 2125928 (+) False G973
TU1222 lncRNA downstream 24867 2123545 ~ 2125928 (+) True G973
XM_036979332.1 mRNA upstream 16750 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA upstream 16750 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA upstream 16750 1859414 ~ 1967576 (+) True tmem131
XR_005052028.1 mRNA upstream 18036 1859377 ~ 1966290 (+) False tmem131
XM_036979059.1 mRNA upstream 213892 1732789 ~ 1770434 (+) False LOC110520782
XM_036979903.1 mRNA downstream 77994 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 113457 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 113457 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 113458 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 113458 2212136 ~ 2258325 (+) False zbtb11
TU710 other upstream 974119 1003783 ~ 1010207 (+) False G583
TU707 other upstream 975173 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1664352 318047 ~ 319974 (+) False G166
TU83 other upstream 1854063 120466 ~ 130263 (+) True G51
TU80 other upstream 1864019 112959 ~ 120307 (+) True G50
TU1265 other downstream 160205 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 160205 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 545657 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 1116019 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1404591 3503269 ~ 3503581 (+) True G2464

Expression Profile