RNA id: NM_001160554.1


Basic Information

Item Value
RNA id NM_001160554.1
length 1224
RNA type mRNA
GC content 0.50
exon number 13
gene id nme7
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1984326 ~ 2101039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGATCTCTAGCTAAAATAATGGAGACCAGTACAGAGGAGCGTTTTGCCTTCCTGGCAGAGTGGTATGACCCCAGTGCTGCTCTCCTGCGCCGCTACCAGCTGCTGTTCTACCCCAAAGatggctctgtggagatgTTTGATGTGAAGAACCAGCGTACCTTCCTGAGGCGGACCAAATACGATGAGCTTCACCAGGAGGACCTGTTTGTTGGAAACCGTGTGAACGTGTTCTCCCGTCAACTCGACCTGATTGGATATGGAGACCAGTATACAGGAAACAAGCTCGGCAGCAAGAAAGAGAGAACTCTTGCTATGATAAAACCAGATGCAGTCAACAAGATGGGAGACATTCTACAGATGATCAATGACGCCAACCTGATCCTAACCAAAGCCAAAATGACAAAGCTGACATGGAAGCAGGCAGCAGACTTTTACACTGAACATCAGTCAAAGTCTTTCTTCAACAACTTGGTGCAGTTTATGACCTCTGGCCCTGTGGTTGCCATGGAGCTGATGGGCGACGAGGCAGTGTCAGTGTGGAGAAGGATTCTAGGCCCCACTGACTCGGGCGTAGCAAGGAAAGAGGCCCCACCAAGCCTGAGAGCTCAGTTTGGCACAGATGGCACCAGAAACGCTGGACATGGGTCTGACTCACTGGCTTCAGCAGCAAGAGAGCTGGAGTTTTTCTTCCCATCCACAGCGGGCCATGGTCCCGCTAACACGGCCAATTGCACAGACTGTTCCTGTTGCGTCATCAAACCTCACGCTATATCAGAAGccctgACAGGAAAGATCCTCCACTCCATCTCAGCAGCAGGTTTTGAGATCTCAGCCCTGCAGATGTTTAACATGGACCGGGCCAACGCAGAGGAATTCCTGGAAGTTTACAAAGGGGTTGTGACCGAGTACCCTAACATGGTGGCAGAGCTATGTTCTGGACCCTGCATGGCCCTGGAGATCAGAGGGACTGACGCCCCGAAGACCTTCAGGGAGTTCTGTGGACCAGCTGATCCGGAGATTGCTCGTCATCTTCGTCCCGACTCGTTAAGAGCTCTGTATGGCAAAACCAAAGTTCAGAATGCTGTCCACTGCACTGACCTCCCCGAAGACGGGATACTGGAGGTCCAATATTTCTTCAAGATTTTGGATGGATGAAGATTATTACACAAATGCACATTCCATTTCTATGAGTATGTATTGAAATAAAAGAGACATTGACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1162 lncRNA upstream 6157 1978107 ~ 1978417 (+) True G927
TU1134 lncRNA upstream 87055 1896766 ~ 1897519 (+) True G901
TU1071 lncRNA upstream 173421 1810668 ~ 1811153 (+) True G848
TU1056 lncRNA upstream 216209 1767838 ~ 1768365 (+) True G836
TU1042 lncRNA upstream 233363 1739281 ~ 1751211 (+) True G824
TU1085 lncRNA downstream 26 2098487 ~ 2101039 (+) False nme7
TU1086 lncRNA downstream 26 2098487 ~ 2101039 (+) False nme7
TU1087 lncRNA downstream 26 2098487 ~ 2101039 (+) False nme7
TU1088 lncRNA downstream 26 2098487 ~ 2101039 (+) False nme7
TU1089 lncRNA downstream 26 2098487 ~ 2101039 (+) True nme7
XM_036979332.1 mRNA upstream 16998 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA upstream 16998 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA upstream 16998 1859414 ~ 1967576 (+) True tmem131
XR_005052028.1 mRNA upstream 18284 1859377 ~ 1966290 (+) False tmem131
XM_036979236.1 mRNA upstream 214140 1736745 ~ 1770434 (+) True LOC110520782
XM_036979903.1 mRNA downstream 78211 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 113674 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 113674 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 113675 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 113675 2212136 ~ 2258325 (+) False zbtb11
TU710 other upstream 974367 1003783 ~ 1010207 (+) False G583
TU707 other upstream 975421 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1664600 318047 ~ 319974 (+) False G166
TU83 other upstream 1854311 120466 ~ 130263 (+) True G51
TU80 other upstream 1864267 112959 ~ 120307 (+) True G50
TU1265 other downstream 160422 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 160422 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 545874 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 1116236 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1404808 3503269 ~ 3503581 (+) True G2464

Expression Profile