RNA id: XR_005052263.1


Basic Information

Item Value
RNA id XR_005052263.1
length 3324
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC118964935
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3291184 ~ 3294574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTATTTCTCAAATGTATGCTTTAGTCACAACTACCAAGTCTAGGATGAGTGAACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGACTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCTGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGGAGCTTTGTGTTTCCGGTTAACTTGAtttgttttcacacactgttgctggtattttggccagtGGACCACTGGTGCTGTTGAATGCAGTATAGGTGTATGGAGCTCTCTACATGTAGAGTAGTCGGTCTGGGCTGCTGCTCTCCATTGCTGTAATGGGTCATACATGTTTCTGCTTTACATGGTGTTTGGTTGCAGGTTTCGTTTTTTGGGTTATTCATTGTCAAATCTTTAAAAACCAAAGCCATACTGCGACATTTTAGTAGCCTATCTAGGACTGTGGCATGTGTCTGAACACTCCCTCCTCTGTGCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGAACACACTCCCTCCTCTGTGCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGGCATGTGTCTGAACACTCTCCCTCCGCTGTGCTCTGTAAACGGGACTGTGACATGTGCCTGAACACTCTCCCTCAGCTGGGACACACAGAAAGCAGCGCAATTGATGTTGAATTCACAAAATGTGAGCGCATCAGGCTGTAATTTCATGAAGTAGATGACTCAACTGTTGACTCTGATTTATACACATTATGCTCATGTGTCCTATTGTCCTTCAACGTGTTCTGTAATGGCCTGTTAGAACTGAAACTTGGCATGGccatttaacctttaacctttcgGCCTGGTAGAACATTCGGTCTGTGCCGTAGGTGCTGTGCGCTGGctggctcgtgtgtgtgtgtgtgtgtgtgtgtttggtgcgcAGCATGTTGGCAGTGCTTGCTGGGACTTGTAGTGCATCGCATCTCAGCCTGTACGGTAGCAGGCCAAAATGAATTGAGAACCCAAATCAATGGGCAGGCTGGATAGATTTGTATCGTAGTCCCGGATTCGGCCCGCTGGCCTTGTGTTTTCCATGTGTTGTAAACTGTCGCGAAATAGCCATTAATGATCCAAACGGTTACATCATCAGGCCTGGGCTGTATCTAATGCCCCTTTCTGGGCCTTCTGAACTGTCCAGAATAGACCCATACGGATCCAAACGGTTACATCATCAGGCCTCGGCTGTATCTAATGCCCCTTTCTGGGCCTTCTGAACTGTCCAGAATAGACCCATACGGATCCAAACGGTTACATCATCAGGCCTCGGCTGTATCTAATGCACCTTTCTGGGCCTTCTGAACTGTCCAGAAAAGATCCAAACGGTTACATCATCAGGCCTGGGCTGTATCTAATGCACCTTTCTGGGCCTTCTGAACTGTCCAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3521 lncRNA downstream 16147 3272092 ~ 3275037 (-) False G2707
TU3525 lncRNA downstream 16147 3274092 ~ 3275037 (-) True G2707
TU3520 lncRNA downstream 17148 3272092 ~ 3274036 (-) False G2707
TU3515 lncRNA downstream 25453 3265363 ~ 3265731 (-) True G2705
TU3492 lncRNA downstream 80583 3208531 ~ 3210601 (-) True G2683
TU3540 lncRNA upstream 209 3294783 ~ 3295721 (-) False G2718
TU3541 lncRNA upstream 209 3294783 ~ 3295721 (-) True G2718
TU3546 lncRNA upstream 14578 3309152 ~ 3309572 (-) True G2723
TU3551 lncRNA upstream 23223 3317797 ~ 3320269 (-) True G2728
TU3552 lncRNA upstream 42821 3337395 ~ 3337805 (-) True G2729
XM_036989269.1 mRNA downstream 287190 3002309 ~ 3003994 (-) True LOC118966169
XM_036980806.1 mRNA downstream 476107 2636662 ~ 2815077 (-) False LOC110523943
XM_036980846.1 mRNA downstream 476107 2661728 ~ 2815077 (-) True LOC110523943
XM_021615446.2 mRNA downstream 672601 2616583 ~ 2618583 (-) True LOC110531934
XM_036980621.1 mRNA downstream 813994 2462283 ~ 2477190 (-) True LOC118964912
XM_036981414.1 mRNA upstream 337764 3632338 ~ 3640949 (-) False smx5
XM_036981538.1 mRNA upstream 353263 3647837 ~ 3700483 (-) False inpp5d
XM_036981612.1 mRNA upstream 353263 3647837 ~ 3700483 (-) False inpp5d
XR_005052360.1 mRNA upstream 353263 3647837 ~ 3700485 (-) True inpp5d
XR_005052400.1 mRNA upstream 413475 3708049 ~ 3720457 (-) False LOC118965007
TU3379 other downstream 312268 2978615 ~ 2978916 (-) True G2605
TU2862 other downstream 547610 2742887 ~ 2743574 (-) True G2192
TU2559 other downstream 756671 2534030 ~ 2534513 (-) True G1954
TU2331 other downstream 1194060 2092410 ~ 2097124 (-) True G1788
TU2151 other downstream 1530754 1753245 ~ 1760430 (-) True G1651
TU3553 other upstream 45139 3339713 ~ 3341868 (-) True G2730
TU3579 other upstream 90732 3385306 ~ 3388215 (-) True G2749
TU3613 other upstream 147764 3442338 ~ 3444099 (-) True G2772
TU3708 other upstream 337733 3632307 ~ 3640893 (-) True smx5
TU3986 other upstream 787589 4082163 ~ 4121474 (-) True LOC110524598

Expression Profile