RNA id: XR_005052837.1


Basic Information

Item Value
RNA id XR_005052837.1
length 4982
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC110527749
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6559067 ~ 6651795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAAAAagataaggtctgtggtaaacacagctTTATGAGATTTTATAAATTTTGTTCTAGATAATCTTCATCGGCTAACTTCACTTTTGGTGAACTTTTAAGCACTTAAAggattcataattcataaaggtcatgttaactgactaaTATTACCTTATCGAACAAAACGTGTACAATCTCCTAAACCTGTAACTTCAGACATTATTTTCTGTGGTTATCCCAAAACCATATTCTTTCCCTATTACTTTTCTGGTcagtgctatccgggatccttgggacatccctacccctaaaccctaaccctaccgtCTACTTAACCATGAAACCTTACCATTTTACATCTTTAAAttgggtagggacgtcccaaggatttaGAATAGCATATACCCTGCTATTTAAGACATTTACGTCATCTGTCTCCACTTTCCAGCCATAGTTTCACAACAGTTCGGTTGCTAGGGATTCTAGGCGTCTTCCTAGTCTGGTTGCTAGCTAATGTGCTAGCTTGCTGTCTGTCTTGTTTTTATGCATAACCTTGCACTTCGTCAACATATAAATAAAGATACATCTATTTAAAGTTTTAATATCAATTCATATTTCGAAGTAGACTGCGATGTGAAAAAGTGTTTACAACTTCACATGAGTTCCGGGaagataaaggagatgggggACATCTTGGCCAATGAAGCTGATCTTCTCGGGATGATCAATGAGTATTTGAAGTATGGTGAATTTGAAGAGACAGTTCATCACTTTGAGAAGGAGTGTAAAAACAAGGGGAAAGTTGTTCCAAAGCCCAGAGGCAACAGTCTTCGGGACTCGAAAACGCTGATTATCCAGAAGGACCTGTTGAGCTCATTTGATGACGGCGACTTCAAGGTGTTCTTCGAGCTGTGGACAGAGTTTGTCCCTTTGGAGGTCAGGGACTGTGATCCTCACGCCCAGAAACTGGAGTTttaccttcatgtccacttcACCATCTTCCCCTTGAAAATCCACTTGGGCAGACATGACCGAGCAGACTTTGAGGTGAGGATCACTCACTTCAAGCACTACCTGGAGACGCGAGGGGCAGCACTCAGTCAGACCACTGAGTTCCTACCCTACTACGCCCTCCCCTTCGTGCCCAACCCTATGGTGCACCCCTCCTTCAGAGATCTCTTCCAGGAGTCCTGGATTCCAGAGATGAAGCAAGAGCTGGAGAAGTTCCTGACTGTGACACTGAAAGTGTCCGACACGCCACGGCTCCTGTCGTTATATAAGGATGGCGGAAGGAACACCAAAGACACCATACAGCAGCTGCAGCTGCAGCTGGCCGAAGCAGAGAAGAGGACCAGCAGCTACATGAGGAGGTTCAATAAGATGCAGGCCGATCACCACAACCTGATAGGAGTCACTGCCGAGCTGGTGGACTCTCTGGAGGCTACAGTCAGTGGGAAAATGATCTCCCCAGAATACCTCCAGAGTATGTGTGTGCGTCTCTTCAGTAGCCAGCTGAGGCAGAGTGCGGCGCAGAGCATCGACTTCACCAGGCCTGGCACTGGATATTACTCTATGAGTCCTTATGATGACGGATATgcTTCCTCATTGCTACGAGCGTCTATTGTACCTCAGAGGCCTAAGGAGGTGCCACTGCTGCCCTCTCTGGACTATGACAAGCTGAAGAGAGACTTGCTGGGGGGATCAGACAGACTCAAGGCCCTGCTGCTCCAGGCCCTGTGCTGGAGACTGACCCGTTCTCTCCAAGGTGAGCAGAGGGACACGGTACTGCAGGCCTACGTCAGCAACGACCTCCTGGATTGCCACAGCACCAGACAGAAACCTGTGCTCCTCTTGATGAGGTCGAAGAACGAGATGGTCAGGCAGTACATGGCTCGTCTCATCAATGCTTTCGCTTCCCTTGCAGAGGGTCGTGTGTACCTGTCCCAGGTCCCGTCTTTGTTGAGGCTGCTCATTGAGTCTCTAAGGACAGAGGAGAAGGACTCTGTGAGCAGAGAGAATGTCCTGGGAGCCCTGCAGAAACTAAGCCTCAGGAGGAGCCAGCAGTCAGCCATGATAGAGGACGGTCTCATTGACTGGCTGGTAGATGAGCTGCAggactctgactgtctgtctgactacacTCTGGAGTACGCTGTGGCCCTGCTCATGAACCTATGTCTACGCACCAGAGGTAAGAGGAAGTGTGCTGAGAACCCTAAATACGTGCTGAAGGTTCTGACTGACCTTCTGGGACACGAGAACCACgagATTCGGCCGTACGTGAACGGAACCCTTTATAGCATCCTGTGTATTCATGCAGTGCGAGAGGAAGCCAAGGAgatgagtatggAGGAGATCCTTCACTGCTACAGTAAAGAGGAGAACCCGGAGCTCAACAGGCAGATTGAGTTTATTATCAAACAGCTCAACTCAGGGGAGGTGACTGAAGAGGGACCAGAGTCTGATGACGAAGAGGAGGATGACGATGATGAGGAAGACGCGATAGAGACGGACCTTGATAAAGAGGAAGTGCTTCAGCTGCAGCCCAGAGAGTTGTCCGGAGAGACACTACTGACCACAGAGTACCTGgggatcaTGACCAACATGGCGACGAGGGTGAAGAGGAGATCGGCAGCTCCTCTTGGACGGAGTGTCGATGAACCCCTGCAGCGACCCGTGACCCCCATCTCCCACCGAAACACACACATCATGGACTTCCGAGGAGGCAGCGAGGGCGACAGGGGTGAGGTAGGGTACCCCTTGAGCAGACAGAGGAGCGAGGACAGCCTGCCCCCGTCCCGCTACAGCTCCCGCCCCCCCACCCGCTCCGGCAGCCGACCCAGCACCAGCGAATCCCTGCACCACTCCATGGACTCAGAGTGTGGCCGTTCGTCCCAGGAGTCTGGGGGGTCATATGAAGGACGAAGAGCCCAGGAGGGGGAGGAGCGCAACGGACACTCTGccggCATTGATAATGTCCCCGGGTTTACAAGCCGGCCCAAGATTCCCCGCACGCCGGAGAGTGATGCACCAGGCGTGGATCCTCGAAGGGGTCGCGTTGTCCCGCCACTGGCCCCCCAGTTCTCCCAGTCTGAGCCCCAGCAGAGCAGCAGCCGACCTGGATCAGGGGCCTCCGTCACAGTGGGAGGGCCAGGGGGCGGCAGACAGAgCAGCCAGTCGTACACAGGAAGTGAAAAGGACCTTTCACCACGGGGCCGCCATATCTCCTGAGGAGCCTCCAGCTTCCTGTAACTCCATCCGCAGGTTGTGATCAGGGTCAGGGCATTAGAGAGGCTAGAGGtcggtggagaggtggagggagagagagaagggtaggaaggagggagaggtggaggaagggggtagagaaggagggagtggagggagagcgaAAGCATAGGAAACAATGTGCAGGATTGTAGCTCGGGGAGGGGCCCCTTTCAAACCTCGGTATAGAACACTTTGGTAACACAACACTGCTCTCAAATAAGCACAACAACAAATAAGCTTGCAAGCCGCTTGATACGCCCTACCTACCTAACCAGCTGGACAAGGCTTTCTTCTCTTTACCTATTTCTCTCTTTTAACTCTCTCTCCTGGAGAATAAACACCAAAGTACTCGCTCTCCCATGTCATCTTAAACACATTGGACGTTACATAACCAGCTACTGGACAAAATTCATTCATTCCAAATCTATGGTACCGTGAACATCACCAGCTATAATGTAGTAGCACTATTGCTAACCAAAGGCTGTGTCTCATCAAAGATGGTTGAAAGGGTTGATCGAGGGTTCCTTCCACCATGTTGCTTTTCCGCTTGACTGTTAGGAATTTTAAATGAGTGACCCATTGAGGAAGGAGGAAATTATTTAGTATTTATGACTAACACTATGGTTAATGGAGTAGGGCTCCTTTACAGACATCTATTTATGACGAACGCTGTGGTGAGTACAtagtaaaacaaataaaacatgtaatcAGTGTCTTATAACGTCCCTCCGTTTCCGGTGACGAGGTGGACGTagtacagggtatataacatGCTCAGGTGAAATAAAGCTGGACTTTGGCCACCTTTTCCTTTTCAGTTTAAAAGGTTTTGATTTTGTTTGGTTTTGACTCGGCCTTCCTAATCCATATCCAGTGGCTCAATGACTGATTCTGCCCTCCTGCTTTCCATCTGAACTTTAAAGCCCTCCAGTTTAACGCTTAATCCTTTTAAGCCTATACTTAAATGCTTAACTAATACTTTCGTAGGAACTACATAAAACAGCTGTAGACAGTATTTTTACAACCAACCAATACACGTCACATTATGGACAAGTCTCTGTTTTGTCCAGGAATTAATTTTTCCTTCGTTCTATACGGATGCTCATAAAGAAACCAGGATTTAAATTTTTTTGGGTCTGTGTGTTTATCAAAATCAAGTTGTTACGCTGGTCTGGATCGTCTCTTGACTTGTAAATAGTTTGTTGGTTGCTCAGCTCTTTGAAGGGAAATGTCAACTAAGTGAATATCAGCTTTGCTTTGATTTGTTATCGTAATTCACTTTGAATAGCTGCTTTCATTGAACTTTTCATTATGTTAAATTATAGTGTTTACAAGAAAGACACAAAGATGATGTACTTCTGTCAGGCTAGTGTAGATTAGACTGTAGATAATCATCTGTCAGGCTAGTGTACATTAGACTGTAGACAATCATCTGTCAGGCTAGTGTACATTAGACTGTAGATAATCATCTGTCAGGCTAGTTAGTGTACATTAGACTGTAGATAATCATCTGTACATTATGAGGTTTTATTCGCGTATAAAATCAATCACATAACGTAGGCTACTTGAATCCGGGTGACATTTAACATTTCCACAGTTTCACCGATGCTTCACTGTACAGTATTTCTGTAATATGTAGCTGCATTTGTGTGATAATGTATTTTGACACAGTAGCAATGAATTGTCATATCTTTGTATACGTGAATTAAATAAACTTTTAAGTGTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6642 lncRNA upstream 43324 6515106 ~ 6515743 (+) True G5273
TU6635 lncRNA upstream 48940 6509927 ~ 6510127 (+) True G5266
TU6633 lncRNA upstream 52879 6505988 ~ 6506188 (+) True G5264
TU6621 lncRNA upstream 60346 6498421 ~ 6498721 (+) True G5255
TU6619 lncRNA upstream 62689 6495793 ~ 6496378 (+) True G5253
TU6757 lncRNA downstream 90676 6742471 ~ 6747632 (+) True G5365
TU6760 lncRNA downstream 96532 6748327 ~ 6748866 (+) True G5366
TU6979 lncRNA downstream 140961 6792756 ~ 6809277 (+) True G5567
TU6992 lncRNA downstream 158249 6810044 ~ 6810274 (+) True G5580
TU6995 lncRNA downstream 160713 6812508 ~ 6812775 (+) True G5583
XM_036984367.1 mRNA upstream 791374 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA upstream 791374 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA upstream 791374 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA upstream 791374 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA upstream 791374 5664172 ~ 5767693 (+) False LOC110526525
XM_021609413.2 mRNA downstream 32304 6684099 ~ 6700304 (+) True b3gnt7
XM_036985429.1 mRNA downstream 376755 7028550 ~ 7056518 (+) True alpi.1
XM_021610103.2 mRNA downstream 412573 7064368 ~ 7093597 (+) False alpi.2
XM_021610191.2 mRNA downstream 412573 7064368 ~ 7094220 (+) True alpi.2
XM_021610318.2 mRNA downstream 444504 7096299 ~ 7107509 (+) False ankle1
TU6645 other upstream 40878 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 1702002 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1702819 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2117159 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2159623 4398904 ~ 4399444 (+) True G3234
TU6993 other downstream 159199 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1073251 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1233596 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1384822 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 1577502 8229297 ~ 8230235 (+) True LOC110501328

Expression Profile