RNA id: TU6676


Basic Information

Item Value
RNA id TU6676
length 1582
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC110527749
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6559067 ~ 6651795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggagaggtggagggagagcgaAAGCATAGGAAACAATGTGCAGGATTGTAGCTCGGGGAGGGGCCCCTTTCAAACCTCGGTATAGAACACTTTGGTAACACAACACTGCTCTCAAATAAGCACAACAACAATACGCCCTACCTACCTAACCAGCTGGACAAGGCTTTCTTCTCTTTACCTATTTCTCTCTTTTAACTCTCTCTCCTGGAGAATAAACACCAAAGTACTCGCTCTCCCATGTCATCTTAAACACATTGGACGTTACATAACCAGCTACTGGACAAAATTCATTCATTCCAAATCTATGGTACCGTGAACATCACCAGCTATAATGTAGTAGCACTATTGCTAACCAAAGGCTGTGTCTCATCAAAGATGGTTGAAAGGGTTGATCGAGGGTTCCTTCCACCATGTTGCTTTTCCGCTTGACTGTTAGGAATTTTAAATGAGTGACCCATTGAGGAAGGAGGAAATTATTTAGTATTTATGACTAACACTATGGTTAATGGAGTAGGGCTCCTTTACAGACATCTATTTATGACGAACGCTGTGGTGAGTACAtagtaaaacaaataaaacatgtaatcAGTGTCTTATAACGTCCCTCCGTTTCCGGTGACGAGGTGGACGTagtacagggtatataacatGCTCAGGTGAAATAAAGCTGGACTTTGGCCACCTTTTCCTTTTCAGTTTAAAAGGTTTTGATTTTGTTTGGTTTTGACTCGGCCTTCCTAATCCATATCCAGTGGCTCAATGACTGATTCTGCCCTCCTGCTTTCCATCTGAACTTTAAAGCCCTCCAGTTTAACGCTTAATCCTTTTAAGCCTATACTTAAATGCTTAACTAATACTTTCGTAGGAACTACATAAAACAGCTGTAGACAGTATTTTTACAACCAACCAATACACGTCACATTATGGACAAGTCTCTGTTTTGTCCAGGAATTAATTTTTCCTTCGTTCTATACGGATGCTCATAAAGAAACCAGGATTTAAATTTTTTTGGGTCTGTGTGTTTATCAAAATCAAGTTGTTACGCTGGTCTGGATCGTCTCTTGACTTGTAAATAGTTTGTTGGTTGCTCAGCTCTTTGAAGGGAAATGTCAACTAAGTGAATATCAGCTTTGCTTTGATTTGTTATCGTAATTCACTTTGAATAGCTGCTTTCATTGAACTTTTCATTATGTTAAATTATAGTGTTTACAAGAAAGACACAAAGATGATGTACTTCTGTCAGGCTAGTGTAGATTAGACTGTAGATAATCATCTGTCAGGCTAGTGTACATTAGACTGTAGACAATCATCTGTCAGGCTAGTGTACATTAGACTGTAGATAATCATCTGTCAGGCTAGTTAGTGTACATTAGACTGTAGATAATCATCTGTACATTATGAGGTTTTATTCGCGTATAAAATCAATCACATAACGTAGGCTACTTGAATCCGGGTGACATTTAACATTTCCACAGTTTCACCGATGCTTCACTGTACAGTATTTCTGTAATATGTAGCTGCATTTGTGTGATAATGTATTTTGACACAGTAGCAATGAATTGTCATATCTTTGTATACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6710 lncRNA upstream 20386 6626354 ~ 6629779 (+) False G5324
TU6713 lncRNA upstream 20386 6628716 ~ 6629779 (+) True G5324
TU6711 lncRNA upstream 22819 6623804 ~ 6627346 (+) False G5324
TU6712 lncRNA upstream 22819 6623804 ~ 6627346 (+) False G5324
TU6688 lncRNA upstream 70392 6578604 ~ 6579773 (+) True G5304
TU6757 lncRNA downstream 90704 6742471 ~ 6747632 (+) True G5365
TU6760 lncRNA downstream 96560 6748327 ~ 6748866 (+) True G5366
TU6979 lncRNA downstream 140989 6792756 ~ 6809277 (+) True G5567
TU6992 lncRNA downstream 158277 6810044 ~ 6810274 (+) True G5580
TU6995 lncRNA downstream 160741 6812508 ~ 6812775 (+) True G5583
XM_036984615.1 mRNA upstream 882472 5664172 ~ 5767693 (+) False LOC110526525
XM_021609413.2 mRNA downstream 32332 6684099 ~ 6700304 (+) True b3gnt7
XM_036985429.1 mRNA downstream 376783 7028550 ~ 7056518 (+) True alpi.1
XM_021610103.2 mRNA downstream 412601 7064368 ~ 7093597 (+) False alpi.2
XM_021610191.2 mRNA downstream 412601 7064368 ~ 7094220 (+) True alpi.2
XM_021610318.2 mRNA downstream 444532 7096299 ~ 7107509 (+) False ankle1
TU6645 other upstream 131976 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 1793100 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1793917 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2208257 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2250721 4398904 ~ 4399444 (+) True G3234
TU6993 other downstream 159227 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1073279 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1233624 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1384850 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 1577530 8229297 ~ 8230235 (+) True LOC110501328

Expression Profile