RNA id: XR_005052898.1


Basic Information

Item Value
RNA id XR_005052898.1
length 5516
RNA type mRNA
GC content 0.49
exon number 10
gene id ankle1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7096299 ~ 7107509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTAGTCTGCCGGAAACGGACAGGCGGGGTTTATGAACTTGGAGGGAACTTCAACACAATAAACCAAGAAAGGAAATCGAAGATGAAATGTGTATTTATCAAAATTgcaaaacataaataaataaacgaAACCGATCAATCTCAATTAAATTGCATCCGACGAGCACGAAAACTTGGATTGCATGCTTTTAGTTCGGTAGCTAAAGTAAAAGTTTTGATGACCAGACGAAATATTGCAGAAGTACGCGAGTCATGCAGCATCGAAGCAAGACCAGTCTGGCAACACAGCTGTGCAAAGCTGTGAATGACGGAGAACCAAGAACCGTGCAGATTCTTCTCGCACAAGGAGCAAATCCCAATCTTGTCGGAAGTAAAGGTGTTGCTGCTGTGCATTTGGCAGTTGGCAAAGAGACTGAGAAAAGTATACGCTGCCTAAAGTTAATTCTACAACATGGGGCAGACCCCAACATCCGGTCTTCGGATGGCTTGACACCCCTGCACGTAGCAGCGTTATGGGGTTGCTATCAGAATCTCAAACTGCTGTTAAAGAATGGAGGGAACGCCAACTTAAAGGATCAGGAAGGGAACAAACCAGGTGATCTGGCACAACAACAGGACAACCGCAGATGTGCCCACCTCCTTCAGGAGCACCAGTCTCAGTCCTTGGACACAGAGGAGGAAGATCTGCCTCAATTCCAATACTCTGTTTACAATGGCCAAGGTGACGCGTCAAGCTACGCTGAGTCCGAAGACTGCAGTGTTCTCTCTCACAGCATGTCCTTGCTGAGTGACTTCGGGGAGGGCCCACTGAGTAGCACACGTCTGACCTCGTTTTTTGAACTGTCTGCTATTAGCAACAGGCACAGTTGGAGAAGAGGATCCCATTCAGGGGCGTCTGATTGTAAATCTAACCCTGAGGTGCGCCACACCAACGAGTGGGACACGGACTCTGACTGGGAGCCTCCGTCAATGTTATCCAGCACTCGTATGTCCGTCGCAGGTCCTAGAGCCGCACTTCCTGTACTTCGGGAGGACGTACCACTCGCTGACTGCAGTGCGCTGCATCCGTCTGTAACTGGGAacagactctctcctcctccgttGGACCTCCTCCCTCCTTGCTTTTCACGACGCACGAGCCGCAAGAGTGTGAGCTTCAGAGAGGAAGTGGACGAATACTTCCCCGTTTTTAGTTCAGAATCTCAGAGGCGGGAGCCAGGGGGTCAGGGTACTGCCTACTCTAAAGACTATACTCTCGACTTCTCGGAATACTCAGAGTTCCTGGATCCAGAGCGCATGGCCACCGTCCTACATCACCAGGGGATCGACGTCACCTCCCCTGAACATGTGTTTGTATTCTCCAAGGATAATAATGAGTGCACTGAGATCGACATGGAAAAAACATTTGTTGGACACTTCCCATTTGAGGAAGAGGACGGAGAAGTCGTTGAGACCCAGGTAGAAGAAGTGAAGGTCCCTGAACGAGCATTATgtggctctgctggcagcagcagcagtagcagcggcACTAGTCGGTACAGCAGCTGTGATAGTGACCACTACATTACGACCCTGGAGGCGTCCCCCAGGCGGGTCTCGCCCTCTGAAGAGGAGCGTAAAGTGAAAAGCAGAGGTGTCGAAgacgacaaacacacacaaaatcctATGAACACTAACAATGTAGATACTGATGAAACTCCCAACAGCTCAGAGAGGTCAAAACAAGCCATGGTAGAACTACCAGCCATGGTAGATAACCTTACATTGACTGACAAAATATCTCCAACCAAAGGTCCAGGTTGTGAAAAAATATTTCCAGATGCTGTCTTAGCGGGTAATGTTGAAGAGTTGTCAACAAGACCGACTGAATGCACTCCCAGACCTGGTTCTACTCCAGCGTTGGAGGAGGACCTGCCTCTGACCCCAAGTCCCTTTGTCACTGGTAGGACGCACTCGCGGCTGAGTCGCTGCTCGGTCATTAGCGGCAAGACCCCCGAAagcctcctctccacctcctcgcTGTTTGAGCAGACCTTGCCTACGCCGACACGCACACGCCGCCAAAACATCAAGTCGCAAGGCAGCGACAACGTCTTTTACGACACGCCATGCGGGCGTAGTCGCACCCCAGTCTTTTCTGGAAACGGGACAGGTAGTACTTCTGGGGACTCATTTGTCATCTACGAGAGCCAAGAGCCTCAATCTAGCACTCTCAGAGCCGATAGAGGTCAATGGTCATATGTCAGTGCCAGCCAAGCGGACACCCTCATCATCGCCAAGGACGACAGAGGTCATGGATCTTGTGTTAGTGCCAGCCAAGCGGACACCCTCATCATCGCCAAGGACGACAGAGGTGAGGGATCTTGTGTTAGTGCCAGCCAAGCGGACACCCTCATCATCGCCAAGGACGACAGAGGTGAGGGATCTTGTGTTAGTGCCAGCCAAGCGGACACCCTCATCTCTAAAACCATGGCTGACACAGTCATCGTAACTCCAAGTTTAGCTGACAAATTCTCTTTACTGGATAATTACTTTACTTTAAAAAATCCTCACAAAGAGACTTTACCCACTTATCTGAGAAAAGACGTTCTTGAAAGTGGTGAATTTCTAACCGACGATTTGTCCAGCTCCAGTGATGCAGTGACCAAGGAGGGGACAGTTGGTAGCTTTGGACCAAGAGTGGAGGAATCCTGGACCACAGAGGAGGCCGACTCAAGCTCATCTTTGTCAAGTTCCCAGACTCCATCTTCATCCAGCTCCAGTTACTTCTCTCCAAAAAGAGATCAGCCCCCATCGACCCCAGGCACTACCCCGCGCTACAGCATGAGTCGACTCTCCCGCGTCCACAAGCCCCAGCGGCTGGCCAGCCTCTCCTACACCCCAGGCGGACGTCCTGTGATACCAGACCAGGAGGAACCGGTGGAGTACCTCTACACGGACACGGAGCAGGGTCACGAACTGATCGAGACCCACGTCCCACCTGCGGCCAACACCTCGCTCAGCTCCAGCATGAGCACGTCCAGCGGCGAGGACACAGTGCTGTACGACTGGCGCTCCCTGCAGGGTGGTGGAGGAACGGAGGCCAAAGGGAAGGAGAACCAGGAGCCCGTGGTGGCTCGGGAGTGGTCAGAGACCAAATGCCTGACGGACAAGGAGCTGAGACGCAGgcttgtggagatgggagagagtcCGGGACCCATAAGTCACCGCACCCGGCCAGTGTACATGAAGAGGCTAAGGCGGCTGTTGCTGGAGCCGGACACTCAACAACAACTGCCGGACCAACCCCGAGGTCCTGCGCAGGGACACAGTCCAGAGCTGTGTGTGGCCCTGCGGACGTTGGTGCTGCCCGACTGCCAGGACGACGAGCTGGCGCTGTGCCAGCAGTTTgaccaaccagaccagaacaggaaGTGGCGGGAGGGCGTCATCAAGTCCAGCTTCAACTACCTGCTACTGGACCCCAGAGTAACAAAGAACCTCCCGTATCGGAGTCATTCCATGAGCCCTATAGATTGTTTTCAGACTTTCATCAGCGCTATATTCTACGTGGGCAAAGGCAAACGCTCCCGACCCTACAGCCATCTGTACGAGGCTCTAGACTACCACCGAGGAGATAAGACTTCTAAGaaacTGTGCTCCAAGGTGCAGCACATCCTCCAGGTTTGGAAGGCCGAGCAGGGGGTGATCTCTCTGCACTGCTTCCAGAACGTCATCCCCGTGGAGGCCTACACGCGTGAGGCCGTCATGGTGGACGCCATTGGGTTGAAGATGCTGACCAACCAGAAGCGAGGGGACTACTACGGGGTGGTGTCCACGTGGCAgttgaagaggaagagggagctgGGGGTGCACCTGCTCTACAGGGCCATGCAGATCTTCCtggctgagggagagaggcagcTCAGACCTCCTGATATCAGGGTGGGACAGTAGTGCCCCCCAGTGGGTAGAGTTGGGTACTGCACCAACAGAAAATGAAAGCATTTATTGAACAAGGTGTTGACTAGTTTACTCCATTCAGACGAAACTTGGGCTTAAAGGTCCattgcagctgtttttatctcaatatcaaatcatttctgagtaATAATTAAGTACCTTTATTAtgatttgttttcaattaaaattgttaAAAAAGGAACAAAAATAACTTCTTAgacaaagagcaatttctcaagcaagaattttgataGGACTGTctaggagtggtctgagtggggagaggaACATTGAAAATGTTCAAATTTACAGCTTGTTGATGCCTGTTGATGttaccaaaactccatcccaccaaaacaggctgacatttcagacGGTCgatttcaaacagctcttacactaaaagggtattatcataattttcacaatattatttCAAGCTCATAGTGTGGGAAGTTAATAAAACACAGGGAAACCACATTTTTGACTGTACTGGGCCTTTTAAAGTGTAAATGTTTTACTTATTGATGTAGAAAGATTGGCTTGTTGGAACACGGGACCAAGATATAGGTTATTTTtctatacatttttttgtgtCCATGTCATACCTAggctcaaccagattcaccttgGAGCTCTAATGGTTGTCATTTCACCTTTCTGTCAGTTCTCCaatctcctcacctccttctctaATCCcatctcctcgcctccttctctaATCCCATCTCCTCGCTTCCTTCTCTAATCTcatctcctcgcctccttctctaATCCCATCTCCTCGCTTCCTTCTCTAATCTcatctcctcgcctccttctctaATCCCATCTCCTCACCTTCTTCTCAACCTCATTGGAAGAGAAATTCCAAGGTCCCGCCTGTCGGACCTTCTTCTCAACCTCATTGGAAGAGAAGTTCCAAGGTCCCGCCTGTCGGTCCTTCTTCTCCAATATGTTTTTAGAAGGAGCCGAAGAGAAAGGTGATGAattgagaaagagacagaatgagTCATTGGAAGAAAGACTGATATTGAAAGCTTGTTCACTTACCTTAGCATCAGTTATATATGTACGTCCATTAAATATGATGCAGATACATGTATTTCTTTAGCAGGAAAACCATTAGGCTTGTATTGTTAGTAGTATGATCATTATGTATGTATTTGTAGATAAAGTCTACCACCAGAATGAAAGCACTAAAGGAAAAATAATCGTGTCACAACCAATGTATGTCTATGGTCAAAACACTGGGTGGAAGGAAAAACACTTTTACACACGTTTCGAGGATTTCGTTATTTACCTCGGTCAAATCAATTACAGATTAACTTGATTTAACTATTCCCCCTTTTAACAAGTGATCTGATAAATGCATAGTTAAAATGAAGTTTCCAAACAAATGTCAATATCATTAGCTATATGCCTATGCTGGTTGTGCTATGTCAAACTGGCAGAAGTTTACGTGTTCGAATCATCTCATCCACAGAATCTTTCAACTGTCTATAGACTATTTCGTCAATGTAGCATTCTTTTTCTTCGTTGTGTGTTAGGATGTTCTTATAAAAACCAAAA

Function

GO: NA

KEGG:

id description
K21411 ANKLE1, LEM3; ankyrin repeat and LEM domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7250 lncRNA upstream 11763 7031984 ~ 7084536 (+) True G5822
TU7244 lncRNA upstream 34125 7058141 ~ 7062174 (+) True G5820
TU7234 lncRNA upstream 82646 7012089 ~ 7013653 (+) True G5815
TU7205 lncRNA upstream 119632 6976249 ~ 6976667 (+) True G5786
TU7199 lncRNA upstream 126425 6969540 ~ 6969874 (+) True G5780
TU7279 lncRNA downstream 599 7108108 ~ 7108385 (+) True G5846
TU7280 lncRNA downstream 2219 7109728 ~ 7109940 (+) True G5847
TU7289 lncRNA downstream 4011 7111520 ~ 7192013 (+) False G5849
TU7285 lncRNA downstream 4774 7112283 ~ 7112561 (+) False G5849
TU7286 lncRNA downstream 4774 7112283 ~ 7112561 (+) False G5849
XM_021610191.2 mRNA upstream 2079 7064368 ~ 7094220 (+) True alpi.2
XM_021610103.2 mRNA upstream 2702 7064368 ~ 7093597 (+) False alpi.2
XM_036985429.1 mRNA upstream 39781 7028550 ~ 7056518 (+) True alpi.1
XM_021609413.2 mRNA upstream 395995 6684099 ~ 6700304 (+) True b3gnt7
XR_005052839.1 mRNA upstream 444504 6559069 ~ 6651795 (+) False LOC110527749
XM_036989283.1 mRNA downstream 222943 7330452 ~ 7331042 (+) True LOC118966183
XM_036985694.1 mRNA downstream 307104 7414613 ~ 7550394 (+) True LOC110528450
XM_036985747.1 mRNA downstream 634053 7741562 ~ 7839934 (+) False LOC110528753
XM_036985790.1 mRNA downstream 634053 7741562 ~ 7839934 (+) False LOC110528753
XM_036986015.1 mRNA downstream 733171 7840680 ~ 7882886 (+) False LOC110528839
TU6993 other upstream 284678 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 578110 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 2239234 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 2240051 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2654391 4439966 ~ 4441908 (+) True G3351
TU7952 other downstream 617537 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 777882 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 929108 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 1121788 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 1147633 8255142 ~ 8255878 (+) True LOC110505168

Expression Profile