RNA id: XM_036986058.1


Basic Information

Item Value
RNA id XM_036986058.1
length 4231
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110528839
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7840680 ~ 7882886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTTGGGTGGCGGCTGTTGGTGGTTGATAGTGTGTTTTATTCCTGCAGCTCAATCAATACATGCTTTGCTAACCGGCTCTATAAACGTGATGCATTCTATTATCTAGCAAGGTTATTTAGTAGGCTATCTGTCACTTGTTCCTGGTGCTAGCCTACTCGGCTATAATAATCATTGTACGTGCGCAGTGCTAATGTCTATGCCAGCGACAAGTCCGGTAGCACACATAAGattgtctctctctctctaccggtCCTGACAGACTGTCGCCATGACAGCGGAGGAGACCATTAACATCAAAGAGGTGGAGGTGATCAAGCTGATGCTGGACTTCCTCAACTCCAGGAAGCTTCACATCAGCATGCTGTCTCTGGAGAAGGAGAGCGGCGTCATTAATGGCCTTTACTCTGACGACATGCTCTTCCTCAGGCAGCTGATTCTAGATGGCCAATGGGAAGAGGTCCTACAATTCATTCAGCCTTTAGAAGGCATGGAAACGTTTGACAAAAAGAGGTTCCGCTACATCGTCCTGAAACAGACATTTCTGGAGGCCCTGTGTGTAAATAATGCCATGTCAGCTGCTGACGACCCTCAGAACCTGGAGCTGTCCATGCAAGAGGCGGTCAGATGTCTCCACAGCCTGGAGGGGTTCTGTCCCTCTAAAGAGGACTACAGTAAACTCTGCCTGCTCCTCACGCTTCCCTGCCTCACCCAACATGCTGAGTTCAAGGACTGGAACCCCAGCACGGCCCGGGTGCACTGCTTCGAGGAGGCCTGCGCCATGGTGGCCGAGTTCATCCCTGCCGACAGGAAGCTGAGCGAGGCTGGGTTCAGGGCCAGCGGCAACCGCCTCTTCCAGCTGCTCATCAAAGGAGTGTTGTACGAGTGCTGTGTGGAGTTCTGTCAGAGCAAAGCCACGGGGGAGGAGATCACGGAGGACGAGGTGCTCTTGGGCGTGGACATGCTGTGTGGCAATGGCTGCGACGAACTCGACCTCTCCCTGCTTTCGTGGCTCCAGAACCTCTCGCCAGGCGCCTTCTCCTGCGCCTTTCAGCAGAAGACCCTGGCCATCCACGTGGATCGCCTGGTCAAGCCCACCAAGGCCGGCCACCCCGACCTGCTCACCCCCCTCATCAGCCGGCTTTCCCCCTGTCCCTCCTCGCCCCTGCAGAGGCCCCAGTCGGCAGACACCTACATGTCTCGGTCCCTGAACCCGGTGCTGGACGGGCTGTCCCATGGCCTGGCGGCCCAGGCCCAGAACAAGAGGGGCACGGAGGGCAGCGTGAGACCGGCGCTCAGCCAAAGCATGGTGGAGAATAACGTGCACCAGCTGGACGACGACTCGCCAGAAAGGATTGCCCCACCGGTTCTGGTTCTGGCCTCCAGTGGACCAAATGTCATGCGCACCCCTCTGGCCCCCGGGGCGGACGGTGGGCCACCAAACGAAAAAGAGCACGACGGTGAGCAGATCCAGGAGTACTACAGGCAGAAGAAGCGTGTCCAGCAGCACCTGGAACAgaagcagcagcagagacagCTGTACCAGCAGATGCTGCTGGAGGGAGGGGTTCACACACAGGAGGGGCCAGATGCCCAGCATAACCTCACTGAGAAGTTCCTCAACAggtccaTCCAGAAGCTGGAGGAGATGAACGTGGGAATGGACAATGTGGGAGAGGGGGGGATCCAGTCTGTGAGCCAGCAGTGTAACGGGACCCCTGGACCCAACTCTAGTACCCACACCCAAGAGACAGGCCCTCTCAGGGACAAGCCGGGAGGGGTCAGCAGCACCCCTCTTATGGCAGGGTCTCAGGGCATGCCCTCCTTCAACGAGTCCCCCGTCCAGAACactcagagTGATCAAAGAAACAGGGCCACTCTGCCTACTCTTCAGGATGATTCGAGCGGATCCCCGATGCGCAGCAACAATTCTCAGAAGATGGAGAAGTCCAAGGCCCAGTTTGTGGCAGTGAACAGTCTGGAGGACACGCAGGCGTTGCGCGCTGTGGCCTTTCACCCCACGGGGGCGCTGTACGCCGTGGGCTCCAACTCCAAAACCCTGCGCGTCTGTGCTTACCCAGACTCCCTCAACACAAGTGGGTCGGGCCCAGTCAAGCAGCCAGTGGTGCGCTTCAGAAGGAACAAGCATCACAAGGGTTCCATCTACTGTGTGGCCTGGAGTCACTGTGGACGACTGCTGGCCACAGGCTCCAATGATAAATATGTCAAAGTGCTGCCCTTCAACGCAGAAACCTGCAATGccacagggccaGACCTGGAGTTCAGTATGCATGACGGCACCATCAGAGACCTGGCGTTCATGGAGGGTCCTGAGAGTGGAGGATCCATCCTGATCAGCGCCGGAGCCGGAGACTGTAACATCTACACCACTGACTGCCAGAGAGGACAGGGGCTGCACGCTCTCAGTGggcatacagGCCACATCCTGTCTCTGTACACGTGGGGTGGCTGGATGATCGCCACGGGCTCCCAGGATAAGACTGTCCGCTTCTGGGACCTGAGAGTCCCCAGCTGTGTGAGGGTGGTGGGGACAGCCCTGCATGGCTCTGGCAGTGCAGTGGCCTCGGTAGCTGTTGACCCCAGCGCTCGTCTCTTGGCAACGGGACAAGAGGACTGCAGCTGCATGCTCTATGACATCAGAGGAGGCCGGATGGTGCAGACGTACCGCCCACACACCAGCGACCTGCGCTCTGTCCGTTTCTCTCCCGGGGCACACTATCTGCTCACGGGTTCCTACGACAACAAAGTCATCATCACTGACCTGCAAGGTGACCTGACGAAGCAGCTTCCTCTGACGGTGGCGGCGGAGCACGGTGACAAGGTCATCCAATGTAGGTGGCACACGCACgacctctccttcctgtcctcctccGCAGACAGGACAGTCAAACTCTGGGCCCAGTGTCCATGACACTGCTGGCTGGCACTGGGAACACTGGAAACCACAGCTCTTAAATCTGGTGTTACTGGGAACACTGGCCACCACAACGAGCACAACACACAGTCCACATCCTTGGACATACCTGCCCCTATACCCCTCCGCAAGGCTCTTAGAGGTGTGTGCTACATGTATAGTAATGCTGTGTCATTTATTCTTTAGCATCTGTGCCTCATGCTAACAGTAGAGCTATACAAAACCACCTTCATTTGACTGTAATGATACGGCGACACCTCTATAGTCCTGTTGAAAATAATATACTCATCAAATGCATCATAGTCTACACTCGCTTAAAGCACACCACAGTCCCTCCTGCTGTTGTTTTCATATCGTCCAGTTTTTAGTTAGCTGTTCTGACGGATGCAGAATGCCTTATATAGTCCATTCAAACCACATTATGTGAATCATATGGTGCCTTGGGTAAAAGTTTAGAATTTTGAATGTGTCGGTGTACATTTTCAGCTTCAAGATGGATGCAAGAAAGGAGGCCTTTCATTTCTAAAGCTTTATCTTGACATGTTCTTATTTAATAACAGCTCGTAAATGTTTTAGGATTAAAATAATCTTGACATAAATTGTTGTTTGGTAGTACTTATGTCACTTATCAAAGATCTCAAACTTGGAAATACATGGCGTTCTTGAAGTATAAGATAATTGTATCATATGTTGTTGGAGGATTGTGTTTGGGATTTCATCTGCGTGTGGATTTTTGTAAATGAATTGTATGAATATTGAATGGGGTATCTTTTATGTAATATTGTAACAATTGTTAATGACATTTTAATGAACAGTATTTCAGTTGGGCTGAAGCTTGGATGGCAAATGATAAAGACTGACCTTTTTATGGTTGTTTTTGGACAGCAATTATGACTGATGGAAAAAGCACTTTGCCCATCTGTGAGTGGGAATATATGGAGCGATGTTAGTGCCATCGGAAATTAAATCccgatacattttttttttttggtggcaCTAATATCACACCATGGGAATAGGCAGAGGGTCGGTTTTAACTGTACTGTAAAATGTGAAGCCTTTGCCTAGGCTAAAAGGTTTTTTATACACATACATAGAAATACATATTAGAGGAAATTAACTTTGTCATGTACCGTATTAAAGTAAAGAGGGTATCAACACTGCACATTTGGAGCACTTAGCTGTGTCAAAGTAGGACTGTGTGTCAGTTTCCCTGCACAAGTAGTTCAAGGGTATAATAgttagtgatttttttttttgtgtacttAAAAGATAAATTAAATGCAACTACGACAT

Function

GO: NA

KEGG:

id description
K24746 WDR47; WD repeat-containing protein 47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7966 lncRNA upstream 1167 7837427 ~ 7839951 (+) False LOC110528753
TU7967 lncRNA upstream 1167 7837427 ~ 7839951 (+) False LOC110528753
TU7968 lncRNA upstream 1167 7837427 ~ 7839951 (+) True LOC110528753
TU7963 lncRNA upstream 101294 7739625 ~ 7739824 (+) True G6445
TU7953 lncRNA upstream 120900 7718908 ~ 7720218 (+) True G6435
TU8053 lncRNA downstream 10869 7893755 ~ 7894244 (+) True G6522
TU8057 lncRNA downstream 14909 7897795 ~ 7898103 (+) True G6526
TU8026 lncRNA downstream 20651 7903537 ~ 7905319 (+) True G6497
TU8394 lncRNA downstream 150598 8033484 ~ 8033732 (+) True G6803
TU8403 lncRNA downstream 158149 8041035 ~ 8041418 (+) True G6812
XM_036985747.1 mRNA upstream 1184 7741562 ~ 7839934 (+) False LOC110528753
XM_036985790.1 mRNA upstream 1184 7741562 ~ 7839934 (+) False LOC110528753
XM_036985694.1 mRNA upstream 290724 7414613 ~ 7550394 (+) True LOC110528450
XM_036989283.1 mRNA upstream 510076 7330452 ~ 7331042 (+) True LOC118966183
XR_005052898.1 mRNA upstream 733609 7096299 ~ 7107509 (+) True ankle1
XM_021611128.2 mRNA downstream 17875 7900761 ~ 7935216 (+) False LOC110528925
XM_021611173.2 mRNA downstream 24380 7907266 ~ 7935217 (+) False LOC110528925
XM_036986235.1 mRNA downstream 31177 7914063 ~ 7935217 (+) True LOC110528925
XR_005053652.1 mRNA downstream 69907 7952793 ~ 7952888 (+) True LOC118966768
XM_036986300.1 mRNA downstream 166109 8048995 ~ 8085970 (+) False nmur1a
TU7952 other upstream 115509 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1029497 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1322929 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 2984053 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 2984870 4854521 ~ 4856248 (+) True G3596
TU8049 other downstream 2505 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 153731 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 346411 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 372256 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1576062 9458948 ~ 9459953 (+) True LOC118966784

Expression Profile