RNA id: XM_036988765.1


Basic Information

Item Value
RNA id XM_036988765.1
length 5322
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118966096
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8803089 ~ 8822710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaatgaataaaagtcccatgatggtagtgactgtccattactgttAATGACTTATCAACCATCATTTACTTTCtcatataaaatatttatttgatgactttattatttcattccaagtcatcaactcatctctatagagctgctgcttatcctgtctgacaaaatcacaattttagtagttcttctaaGTAAATAAGACCTACTTTTATGACCGCTGAACACCAActgtcaatcacttagatcatgtatttccaGGTAGAGAATCCTCGCAACGCAACTGCTTTTTATCTCTCTCATGCATTCTCTCGTCTCTCCGTCTCAGTCAATGAGGTTTCCGTATCTGCTCCACACAGAGTGGACAAGCAAGTGGGCGTGCAATGGATTGTGGGAATTAATTGCCATATTTTctgtgctaaactatgtagaatattggcctgttggaaactacaactccctactacattgcatagttcgtgcttgatctgatttatctctacagaaactgAGCATCGAgctcacagaagaagaaaaaaattaactatatggaattcaaataattgagccgacgtcggtcaattagttgtttaaaaaccgaaaaataacaaaaatgttggTTAAATGCTCAGCTCTAGATTCTAATGACATCATCAGTGTGCATCGTGTGatttttaaccaattatgagtaggcattgcctgctaattggttgatgatgtcatagaaaacacttatcttcctctttcttttttactacaaaacatagaaatgcccatttttcacatatgctgatgttggggtggtgctggagatgatgaatatgaagttgaaacatTTAGAAATTTCCCTTTAACATTTCTTCAAACTGCCTTGTATTTATGATTGTCCTTGAAGTTATTAGAAGTTACAGTATTTGAAGTTTATAGCAATTTGGATTTTTGTAGAGGATAGATATTGCCAGGATAGATAGATATCTACAGGCCAGTTTCAATACAAATGActtatacaaaatacattttattgggcTTTAGAAATTAAGCAGTTAGGCTGACATCACACTAAGGTTTTTTCTCAGAGAAACAGCAGCGTTTTCCTCATTGTTTTCAATGGTGCAGatgtatttgacacactgaatgtgCATCACAGCCTTACATATTATTTGTTTGACTTTGATGATTTCTGCGTTTTTTTTCCCAAggactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTACAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACGAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGGAAATACGAGACCAGCTACAATATTGGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCAGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGACGTATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACCTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCGTGTACAACACTGAGGTGTCAAAGGAGGACCCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACTAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCTCCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTATTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAATGTCTAGTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTCATTTCAACAATCTTGACCTCATGCGAAGATCAGGCATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCTACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACTAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGAACAGTACCTTCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGGATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCCGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCTGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCACGCTCTTCTATCTCTCTAACACCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCTCATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCATTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCAATACAAAGGGTTCCAAGAATGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCACATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCCCATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAACAACGAGAGCATTCATTAGTTCAGATGAGAATCtaatcgtattggtcacatacgccgAAAACAACTGTGAGATGCTTTAttacgagcccattcccaacaatgcagagttaaaaagtaagaaaatattttctaaatagtaacacaataacaataacaaggctatatacaaggagtaccagtaccgagtcaatgtgcatgggtgggaggtagttgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9261 lncRNA downstream 2931 8793968 ~ 8800158 (-) True G7539
TU9260 lncRNA downstream 13605 8788864 ~ 8789484 (-) True G7538
TU9259 lncRNA downstream 16929 8785688 ~ 8786160 (-) True G7537
TU9253 lncRNA downstream 21957 8773925 ~ 8781132 (-) True G7531
TU9219 lncRNA downstream 32618 8716200 ~ 8770471 (-) True G7503
TU9280 lncRNA upstream 8355 8817259 ~ 8818015 (-) False LOC110529913
TU9282 lncRNA upstream 12536 8821440 ~ 8823905 (-) True LOC110529913
TU9286 lncRNA upstream 21609 8830513 ~ 8846423 (-) True G7559
TU9299 lncRNA upstream 54247 8863151 ~ 8863564 (-) True G7572
TU9537 lncRNA upstream 56028 8864932 ~ 8865803 (-) True LOC110531731
XM_036988313.1 mRNA downstream 41566 8751438 ~ 8761523 (-) True LOC118966070
XM_036988292.1 mRNA downstream 41780 8751437 ~ 8761309 (-) False LOC118966070
XM_036987566.1 mRNA downstream 68760 8726535 ~ 8734329 (-) False LOC110514907
XM_036987621.1 mRNA downstream 68760 8726535 ~ 8734329 (-) True LOC110514907
XM_036987529.1 mRNA downstream 70047 8726535 ~ 8733042 (-) False LOC110514907
XM_036988462.1 mRNA upstream 2682 8811586 ~ 8813180 (-) False LOC110529913
XM_036988504.1 mRNA upstream 2682 8811586 ~ 8824606 (-) False LOC110529913
XM_036988395.1 mRNA upstream 8920 8817824 ~ 8824526 (-) False LOC110529913
XM_036988540.1 mRNA upstream 12563 8821467 ~ 8824526 (-) False LOC110529913
XM_036988599.1 mRNA upstream 25818 8834722 ~ 8842967 (-) False LOC118966084
TU8936 other downstream 427525 8330314 ~ 8375564 (-) False LOC110529747
TU8825 other downstream 619156 8164276 ~ 8183933 (-) False G7184
TU8827 other downstream 619156 8182308 ~ 8183933 (-) True G7184
TU8401 other downstream 763626 8039179 ~ 8039463 (-) True G6810
TU8272 other downstream 918089 7884343 ~ 7885000 (-) True G6706
TU9788 other upstream 344366 9153270 ~ 9153947 (-) True G7985
TU9756 other upstream 372551 9181455 ~ 9183034 (-) False G7965
TU9757 other upstream 372551 9181455 ~ 9183034 (-) False G7965
TU10337 other upstream 759037 9567941 ~ 9590586 (-) True G8455
TU12268 other upstream 2753833 11562737 ~ 11563125 (-) True G10263

Expression Profile