RNA id: XM_036988462.1



Basic Information


Item Value
RNA id XM_036988462.1
length 1007
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110529913
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8811586 ~ 8824606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGTGGCCATGTATTAACTACTAAGTGAGTCTATGACATGAAAACAGTGGTTAGATTCTGCCATTGGGACTGCTCTGATAATGTTTCCATTCTCTCCTGCTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtggtggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTGTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACACCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATACTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCTAAGGGGGCCATGAGGTATGTTCTTAAAGGGAAATTtaacaacttcatattcatctccAGCATCACCATATGTGAAAATTACACATTTCCATGctttgtagtaaaaaaaatatagaggGACGTAACTGTTTCCAATAGTGCTGAgaaattagtgctttttgaggttggtttggtttccattcaaatatttaaaaataatCACGGTTTTGGATTTCAATACTTTTTTTAGACATTGAATGCACTATGGATTATgtgtgttgaatgctgtaacaacaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9261 lncRNA downstream 11428 8793968 ~ 8800158 (-) True G7539
TU9260 lncRNA downstream 22102 8788864 ~ 8789484 (-) True G7538
TU9259 lncRNA downstream 25426 8785688 ~ 8786160 (-) True G7537
TU9253 lncRNA downstream 30454 8773925 ~ 8781132 (-) True G7531
TU9219 lncRNA downstream 41115 8716200 ~ 8770471 (-) True G7503
TU9280 lncRNA upstream 4079 8817259 ~ 8818015 (-) False LOC110529913
TU9282 lncRNA upstream 8260 8821440 ~ 8823905 (-) True LOC110529913
TU9286 lncRNA upstream 17333 8830513 ~ 8846423 (-) True G7559
TU9299 lncRNA upstream 49971 8863151 ~ 8863564 (-) True G7572
TU9537 lncRNA upstream 51752 8864932 ~ 8865803 (-) True LOC110531731
XM_036988765.1 mRNA downstream 2682 8803089 ~ 8808904 (-) False LOC118966096
XM_036988313.1 mRNA downstream 50063 8751438 ~ 8761523 (-) True LOC118966070
XM_036988292.1 mRNA downstream 50277 8751437 ~ 8761309 (-) False LOC118966070
XM_036987566.1 mRNA downstream 77257 8726535 ~ 8734329 (-) False LOC110514907
XM_036987621.1 mRNA downstream 77257 8726535 ~ 8734329 (-) True LOC110514907
XM_036988395.1 mRNA upstream 4644 8817824 ~ 8824526 (-) False LOC110529913
XM_036988540.1 mRNA upstream 8287 8821467 ~ 8824526 (-) False LOC110529913
XM_036988599.1 mRNA upstream 21542 8834722 ~ 8842967 (-) False LOC118966084
XM_036988639.1 mRNA upstream 21542 8834722 ~ 8842967 (-) False LOC118966084
XM_036988675.1 mRNA upstream 26094 8839274 ~ 8843050 (-) True LOC118966084
TU8936 other downstream 436022 8330314 ~ 8375564 (-) False LOC110529747
TU8825 other downstream 627653 8164276 ~ 8183933 (-) False G7184
TU8827 other downstream 627653 8182308 ~ 8183933 (-) True G7184
TU8401 other downstream 772123 8039179 ~ 8039463 (-) True G6810
TU8272 other downstream 926586 7884343 ~ 7885000 (-) True G6706
TU9788 other upstream 340090 9153270 ~ 9153947 (-) True G7985
TU9756 other upstream 368275 9181455 ~ 9183034 (-) False G7965
TU9757 other upstream 368275 9181455 ~ 9183034 (-) False G7965
TU10337 other upstream 754761 9567941 ~ 9590586 (-) True G8455
TU12268 other upstream 2749557 11562737 ~ 11563125 (-) True G10263

Expression Profile