RNA id: XM_036988395.1


Basic Information

Item Value
RNA id XM_036988395.1
length 4692
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110529913
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8811586 ~ 8824606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTTTAATCCTGAATCCAGTTGCCCCTCTTGTACTGGGATAAAACAATAGGCAAGCCATGAACCTTATGGAGGAGTACATGTGTTTTGTAGACACACCTGGGTTCTAGACTGGCTGAGGTAAACATTTTAGGAAAGCCTGGGTTTTTAATATCGAAGTCATTCTAAGGGGTAGGTTTGACAAAGcaaatgagtgagtgagtcttTGACATGAAGACAGTGGTTAGATTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAATGCTCAACATTGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTGCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCAAGTCAAACCTCTCTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGTTGACTGAGAGCATGGTGACAGAGCTGGCTGTTAAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCACCATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACCAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCGTTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAACAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCACAAATGCTGAGTTCAAGGAGACAGTTCCACTTCCTTGCTTAGACATGACATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGAGATGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCAAAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTCGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTTCAGAGGAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAATGTCTACTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCGACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACATCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCTGAGAAAGGAGTGAGTGATGTCATCTCTAGATCATTTAACATTGTGGAGGACGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCTTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACTACTGAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCACGCTCTTCTATCTCTCTAACACCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCACATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGTTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAATGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGTATAGTACACATACATCTTTCATGAATAACACTGCTGTTGACCTTTTATATGATTATTTGTGTCATGGCATTGCACTGGTTCTTTTCAGTTGATATGCTGTACTTTAAGATATCAAAAAAATGTAAGTTTGTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9200 lncRNA downstream 2652 8654763 ~ 8815172 (-) True G7490
TU9261 lncRNA downstream 17666 8793968 ~ 8800158 (-) True G7539
TU9260 lncRNA downstream 28340 8788864 ~ 8789484 (-) True G7538
TU9259 lncRNA downstream 31664 8785688 ~ 8786160 (-) True G7537
TU9253 lncRNA downstream 36692 8773925 ~ 8781132 (-) True G7531
TU9286 lncRNA upstream 5987 8830513 ~ 8846423 (-) True G7559
TU9299 lncRNA upstream 38625 8863151 ~ 8863564 (-) True G7572
TU9537 lncRNA upstream 40406 8864932 ~ 8865803 (-) True LOC110531731
TU9538 lncRNA upstream 43586 8868112 ~ 8868396 (-) True G7790
TU9535 lncRNA upstream 44147 8868673 ~ 8871275 (-) True G7788
XM_036988462.1 mRNA downstream 4644 8811586 ~ 8813180 (-) False LOC110529913
XM_036988765.1 mRNA downstream 8920 8803089 ~ 8808904 (-) False LOC118966096
XM_036988313.1 mRNA downstream 56301 8751438 ~ 8761523 (-) True LOC118966070
XM_036988292.1 mRNA downstream 56515 8751437 ~ 8761309 (-) False LOC118966070
XM_036987566.1 mRNA downstream 83495 8726535 ~ 8734329 (-) False LOC110514907
XM_036988599.1 mRNA upstream 10196 8834722 ~ 8842967 (-) False LOC118966084
XM_036988639.1 mRNA upstream 10196 8834722 ~ 8842967 (-) False LOC118966084
XM_036988675.1 mRNA upstream 14748 8839274 ~ 8843050 (-) True LOC118966084
XM_036989296.1 mRNA upstream 28052 8852578 ~ 8860211 (-) True LOC110514872
LOC110531731 mRNA upstream 39662 8864188 ~ 8867895 (-) False LOC110531731
TU8936 other downstream 442260 8330314 ~ 8375564 (-) False LOC110529747
TU8825 other downstream 633891 8164276 ~ 8183933 (-) False G7184
TU8827 other downstream 633891 8182308 ~ 8183933 (-) True G7184
TU8401 other downstream 778361 8039179 ~ 8039463 (-) True G6810
TU8272 other downstream 932824 7884343 ~ 7885000 (-) True G6706
TU9788 other upstream 328744 9153270 ~ 9153947 (-) True G7985
TU9756 other upstream 356929 9181455 ~ 9183034 (-) False G7965
TU9757 other upstream 356929 9181455 ~ 9183034 (-) False G7965
TU10337 other upstream 743415 9567941 ~ 9590586 (-) True G8455
TU12268 other upstream 2738211 11562737 ~ 11563125 (-) True G10263

Expression Profile