RNA id: LOC110531731


Basic Information

Item Value
RNA id LOC110531731
length 2185
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110531731
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8864188 ~ 8867895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAATCTTTGTTTTATGAAAATCTTTTATAGTTGATTTGAAAGATATAGTTCAATATACTTCCAAAACCGTACCACAAGAGATGCATGTTAATGTTTAGATTGAGTTTAGCAGCTCTTAACTAAACTCCCAGGTACAGAAGATGCCTTCGTTCAATGAttcttatgtgtaatgtaatggaactgtgTGTCATTACCATGAGCTATCACCACCATGGcactgtctgtaatgtaatgtaatacaATGGTGAGGATGCTGATGAATGTATTTTACCATGTACCTAAATCTGCTGTTGTCCCCTCTGTTAGGCTAACATCTCCTCTTTTTAGCTCAAGTTCGCACTGTCATGTGGGCCTTCTCCGTCAGTGTCGGCCTCTGCACACAACCATCAGCAGGAGAGGACTTGAGGAGTTTTTCGACATACCTGAAAACTGGGGGGAGGCAACCGTGAAGTCAGGAGCACCATGGATGGCCAAGCAACTAAGGACAAAAAGTAATGAGGACTTACATAAGCTCTGGTATGTGCTCCTGAAAGAGAAGAACATGCTGCTTACCACTGAGCAGGAGTCCAAAAGGCAAAGGATTCAGATGCCAAGTCCAGAGCGACTGAAGAAGATTGAAAGGTCCATGAAGAGACAcagtggtgaaggagagagaagacgCTCTCCGCCTGCtccagacaggtcaggagagagcaAGACCTGGGGTCTGGAGAAAGGATGTCTTTGGACGGGTCTACTGGTACCGGTTTAGAGAGCATGCCCTTCCTTGGTACATGTGTatcagtataactttagaccgtcccctcgcccatacccgggcgcgaaccagggaccctctgcacacatcaacaacagtcacccacgaagcatcgttacccatcgctccacaaaagccgcggcccttgcagagcaaggggaactactacttcaaggtctcagagcaagtgacgtcaccgattgaaacgctatttagcgcgcaccgctaactaagctagccgtttcacatccgttacacatgaaCAAGCGATGCAAACGTTTCTACACACCCCTATATGTCACCCCCCACATGAGGTAGGAAATATTGTTCATGCATTCATTTATAATAGTGTACAGTAGGAGAACCTCCAAGCAGAGCACTTAAATTATACAAGATGTGACATGGTTTTGTCCTGGGTCAGCTTCAACTTCACAAGGGCAAAAGCACTCGTCTGTTGTCACAATTAGTCTTCTTTATTTTTTCCAGGCTTCGTCTAGAGAAACACCTCCGTGCTAAGAACAGAAAGCAGAACGGAGAGAGACAAAAGCAAGCCGGGCTCCAGGAGAAGTTTCCTCAAATGAAGGCCCGGACATCATGAGACTGTTAATGACCAATAAACATTATTCTCCCTGCTGCCATTCAGATTGGAGCTTGTGACTGTATCTAAATTAATTTACCCCCTTTTTTTTGCATAAATATGTCTGTCATCAGCATTTATTTGATGTTGGTAGACTGTAGCATTTGTATGTCTTTCTCTGTATCATGATGCCTTGACATTGGTTATTAATATTAAAGTGATGTACAGACTGAGTTTGTACTCTATTTTTAAGCCACAAAAATCTAAATATCCTTGAACATAACTTAATTTTCAAGTTGAAAGAGTGCGCAAAGAATAAATTGTGGGTGAATAAATATTCCGTTTTTAATCAAACTTTTGTAATGCTCTAAACCCTTTCCATCAATTGTCACTCCAGGTATTCTGAACATTGTCTTTTCTATTATGAATGGGATATTTTTCATACCAGTTTGACTGCTCAGACAAGTGTAATAAACTATCATTACGAACGTGAACGTTGACTAACAAAAGTTTAAGTTATACACCTTCAATACTTGTTACCTACATTAAGCCAAGATGGATCTTGAACTTCGATACCATTACATGAAGGGTCAATGGTGAAAACCCTGCAAGCCAGTGATATAGAGACATTAGAAAAGGTTTGTTTTCAGTGGtgcaaagtacttaagtaaaaattatTTAAAtcgttttgggggtatctgtactttaactatttatatttttgacaacttcagTACATTCATAAAGGACAAAAATGTACTTTTGACTCCATCCACTTTccctgatacccaaaagtacattttgaatgctttgtatgacaggaaaatggtccaattcacacacttatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9299 lncRNA downstream 624 8863151 ~ 8863564 (-) True G7572
TU9286 lncRNA downstream 17765 8830513 ~ 8846423 (-) True G7559
TU9282 lncRNA downstream 40283 8821440 ~ 8823905 (-) True LOC110529913
TU9270 lncRNA downstream 41478 8807989 ~ 8822710 (-) True LOC118966096
TU9269 lncRNA downstream 43805 8805981 ~ 8820383 (-) True G7546
TU9538 lncRNA upstream 217 8868112 ~ 8868396 (-) True G7790
TU9535 lncRNA upstream 778 8868673 ~ 8871275 (-) True G7788
TU9545 lncRNA upstream 7801 8875696 ~ 8878223 (-) True G7794
TU9557 lncRNA upstream 21480 8889375 ~ 8890241 (-) True G7804
TU9590 lncRNA upstream 44256 8912151 ~ 8917673 (-) False G7820
XM_036989296.1 mRNA downstream 3977 8852578 ~ 8860211 (-) True LOC110514872
XM_036988675.1 mRNA downstream 21138 8839274 ~ 8843050 (-) True LOC118966084
XM_036988599.1 mRNA downstream 21221 8834722 ~ 8842967 (-) False LOC118966084
XM_036988639.1 mRNA downstream 21221 8834722 ~ 8842967 (-) False LOC118966084
XM_036988395.1 mRNA downstream 39662 8817824 ~ 8824526 (-) False LOC110529913
XM_036989293.1 mRNA upstream 49973 8917868 ~ 9022064 (-) False pex5la
XM_036989303.1 mRNA upstream 49973 8917868 ~ 9022064 (-) False pex5la
XR_005053504.1 mRNA upstream 49973 8917868 ~ 9022064 (-) False pex5la
XM_036989309.1 mRNA upstream 49973 8917868 ~ 9098569 (-) False pex5la
XM_036989311.1 mRNA upstream 49973 8917868 ~ 9098569 (-) False pex5la
TU8936 other downstream 488624 8330314 ~ 8375564 (-) False LOC110529747
TU8825 other downstream 680255 8164276 ~ 8183933 (-) False G7184
TU8827 other downstream 680255 8182308 ~ 8183933 (-) True G7184
TU8401 other downstream 824725 8039179 ~ 8039463 (-) True G6810
TU8272 other downstream 979188 7884343 ~ 7885000 (-) True G6706
TU9788 other upstream 285375 9153270 ~ 9153947 (-) True G7985
TU9756 other upstream 313560 9181455 ~ 9183034 (-) False G7965
TU9757 other upstream 313560 9181455 ~ 9183034 (-) False G7965
TU10337 other upstream 700046 9567941 ~ 9590586 (-) True G8455
TU12268 other upstream 2694842 11562737 ~ 11563125 (-) True G10263

Expression Profile