RNA id: XR_005053504.1


Basic Information

Item Value
RNA id XR_005053504.1
length 4860
RNA type mRNA
GC content 0.47
exon number 15
gene id pex5la
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8917868 ~ 9098569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTGTTGATTTCACTTGTTATAGGGGAGAGATTCTAGGGCTGCAGATAAGACTGTTGCCATGGTCCTGAAGGAGATACCCAGTAAGGCGTCTTCAGAAGTGAAACCCCTCCTCACGGTGACAACCAAGCTGGTGAGTGAGCAACAAGAGAGCCGCCCCCTGCTAAGCCCCTCCATCGACGACTTTCTCTGTGAGACCAAGTGCCATGGCGCTGCCCGCCTAGTGACTTCGAACACAGCAGTTCTGTCCTCCACATTGGATCTATTGGACCTCAGCGAGCCCGGAGAGAGAAGGAACAGCAAGCAGGACAAGAAGAGCCCTCTGCTGTCACGTGGGGACGGGCCTAAGAACATGCCTCACCGGAAAAAGACGACGGACGAGACCGAGCTGATCCAGGTGGATGTAGAGCAGACTGTCCCCTGTCCCCACACTCCTGAAAGAGTGTCACTTGACTCAGTCAACATTGCCTCTCCTTTGGAGAAATGGGAGGAGCTCAATGTCCACACTGAACGAAACAGCAGCAGAAAGTGGAAATTGGAGAGACGGGGTTCATCGAAAAACTCCTCCAGTGAACTTCTGTGGTCCATAGACTGCAAAACGCAATCAGAGCCACCCTCCAAGAGCTCTTTGGAAGTAAATACCATAGCAGAGGCCGAGCCAGCTCTAGCATTTCAACTCAACAGACAGTATATTAGTGGAAGACATggccGTTTGAGTAAAGAGCGGTTCGGTGGCGGTGCCCTCCTGTCCAGAAACCAGTCCCTGGAGGAAGAGTTTGAGCGAGCCAAAGCAGCTGTGGAGtcAGACACAGAGTTCTGGGACAAGATGCAAGCAGAGTGGGAGGAGCTAGCACGACGGAACTGGCTAACGGAGAACGAGCAGGCGCAGATCCCCTCCAGTGTGTCGCCTCACGAGAAGGGTTACTACTTCCACATGGACAATCCCTACAAGGACTGGCCCAACGCGTTTGAGGAGGGTCTTCGAAAGTCCAAAGAGGGAGACCTGCCCAACGCTGTGCTGCTACTGGAGGGGGCCATCTTGCAGGACCCCCAGGACTCAGAGGCTTGGCAAGTGTTGGGGACCACCCAGGCCGAGAACGAAAACGAGCAGGCAGCTATCGTCTCCCTCCAGAGgTGTCTCGAGCTCCACCCCAATAACCTCCAAGCCCTCATGGCCCTGGCGGTGAGCCTGACCAACACGGGCATGAGGCAGGATGCATGCGAGGCGTTGCTGCGCTGGCTCCGTCACAACTCCAAGTACAAGCACCTGCTGAAGGGCAAGAGCCACCTGGCGGGCTCCCCGGGCTCCCAACGTAGGATGTCTCGCGTCTCAACTGTGGGCAGATATGAGAGCTCTCTACTGCCTGAGGTGAAGGATCTGTTTCTGGAGGCAGCCCAGCACAACAGGGACACCGACCCGGACCTGCAGACGGGCCTGGGTGTGTTGTTCAACATTAGCGCAGAGTTCAACAAAGCTGTGGAGGCCTTCAATGCTGCCTTGACGGTGCGGCCAGAGGACTACCTGCTGTGGAACCGCCTGGGGGCCACGCTGGCTAACGGGGACCGCAGCGAGGAGGCGGTAGAGGCCTACACCCGAGCCCTGGAGCTCCAGCCGGGCTTCATTAGATCCCGTTACAACCTGGGCATCAGCTGCATCAACCTAGGAGCACACCGGGAGGCGGCCAGTAACTTCCTAACAGCCCTGAGTCTGCAGAGGAAGAGCCGTAGTCAGCAGCTCTCGCAACAGGTCATGTCGGGGAACATCTGGGCCGCCCTGCGGATAGCCCTCTCCATGATGGACCAGCCGGAGCTCTTCCAGGCAGCCAACATCGGAGACTTGGACCTCCTCATGAAAGCCTTCAACCTGGACATGTGAGTGGAGATGGGCCTTGGAGACAAGTCTCTACTCTCCTACCAACAGGCCTTGGAGACAAGTCTCTACTCTCCTACCAACAGGCCTTGGAGACAAGTCTCTACTCTCCTACCAACAGGCATTGGAGACAAGTCTCTACTCTCCTACCAACAGGCATTGGAGACGAGTCTCTACACTCCTACCAACAGGCCTTGGAGACAAGTCTCTACTCTCCTACCAACAGGCCTTGGAGACGAGCCTCTTCTCTCCTACCAACAGGCCTGGGAGAAGAGTCTCTACTCTCCTACCAACAGGCCTTGGAGACAAGTCTACTCTCCTACCAACAGGCATTGGAGACAAGTCTCTACTCTCCTACCAACAGGCCTTGGAGACGAGTCTCTACACTCCTACCAACAGGCCTGGGAGAAGAGAGTCTCTACACTCCTACCAACAGGCCTGGGAGAAGAGTCTCTACTCTCCTACCAACAGGCCTGGGAGAAGAGTCTCTACACTCCTACCAACAGGCCTGGGAGAAGAGTCTCTACACTCCTATCAACAGGCCTGGGTGAAGAGTCTCTACACTCCTATCAACAGGCCTGGGAGAAGAGTCTCTAAACTCCTACCAAATGCCAAAAACCCAAAGTGTACAGTTGGAAAGAGCTGTTTTGTCATGTTAATGATGAGTGTGTGGTCTATTTTGGCGAGCACTACAACATCTTTACTACTCCTCAGTACCTCTGCAGTCTTCTTGAGTACTGCATGTGCTCGAAGAGTCTATTTTGCGATGGATTTGCACTGCAATTTGTGATTTCCCCGAAGAGCACAAGGACGGGCAAAGACTGTACAAGTAATGCCTTAGAGAACACAGTAATTAAAACTAACTCATTGGaactgagcaagagagagaaagagaaatactgAGAATGCTTTTGCTGAACAGTGTTGAGGGTTGACAAGAACGGTTTCCTCATCCAGATACTTTTAGAGTGTCCGGATTATCACACTGACCTAAAGGAAGGATTTAGTGAGTAAAATCAATAAAGACTACACCATAAGCCGTGGGACTCGGAGACAGTTTTCAGCAGAGAATCAATattctttttttggggggttggtTTTTATCCTCTTTTCTGTGAGGAACAACACTGCATGGAAACTAAAGCATGTTCCTAAATGGATTCGGTGGCACTTGCCTGAACCTAAAAGCTAAGAACTTTTTTTCCTTACTTGGGACTCTGCACTTTGAAAAACAAACAGATCATTTCCTCTTATCTTAATGAAACGAGACAGATTGTAAAAGCATTACCGTAAACGCATGCTAAAACGAAATTGATTTACACAATTTTTATGGCAACCAATGTAAGCCATTTTCAGATTCATTTTTTGACTTCCTCGAATACCTGACATCCTCCGAATTCTTCACGTTTTGTGGTGTTTCCAGCTCCTCATTTCACTTTACCCTAACTGGTTTGAGAGAAGCACACATTAGCTGGACAAGATGGACCTGTATTTTTCACTCAGAGCTGGGAAATGGTTGGAACAGTCCAGTAGCAAACGCAAGACGAGGAAAACAGAGAAGTCTTTTGTGTATGGAATCACTGTTGAAAACATCAAGGAGCCAGAGCCAACTGCGGAGACACAGCACATATGCGCACGCTGCTGGCAATCTGCATAGGAGGTTAGCTTTGAAGACCAGAAAACACATCGCGGACTGTACAACGTCAAAGGCAACTGGGCCAACACGTTATGGCATCCTTCCATTTATTAATTCATTTAGTCTGTTGCCCAACTACCCCAACAAGATGATATTATTTCAGTCCCACCCAGCGAGCAAAGGCGGTTGAGATCTAGTTGTAACCAATCATGATCGTCACTGCGATCATGATTGACTACGTCTTAGTGAGTCATAGAACGATGGCTGACAACTCTACACTGTAGATTTATATGGAAAATAGTATTGAGAACAGAATTGTTTTTATTCCAAAGTGCATaatttacagaaaatgttttCTGTCCCCATGTCTCCTAGTTGCCCTTTACTGTCAGCAGCATATACACTGTAGTACAATGCTGAACCAGGATTTACTGTATCAAGTGATTTCTTCAAAATCACTCTGATTTCTTATGGTCTAGTAAGCCTGTGCTTCttgaacaaaaataaatgtagTTATGTAGaagattaaattatttttttaacagtTTTTGAATTATTGGATTaccaactatatatatatatatatattactgtagaatTTATATTGATGTGTGTTGAGTTAGGATGCCCGATGACAAAGTACCTTTTCTAGAACAGTTGACCTTCTCAGGTGTGATGACCTAGCTACACCTAACATAGTCCAGGTTGAATGCATGCTAGATCTTCTATGCTTTATTTTGAATGATCTTATATTTTCATGCATGCAGGGCTTTTCTTTCCCCTAATTCTAAAAACAAAATATAGCATGATGTTACATAGCAATATTTTTCCAATCCACTTTTAAAACGTCTTCATTTTATGAAATGTAACATACCTATTGTATATTGTGCACAACATACAATAACAAAACATTTGCAGTGAATCTGGAGAGAAACCAAAAGTAGTGCTCTCTAACTGACTACCGAGTGCAGGTCTCGGCCCACACGCCAACCGTTTGGCTAAAGGGTTTCGGATCCTCTCAGGCGTGTATACAACTGAATGACCACAACGCTTCCTGCTCAGTGTAATAGCATTAAGTCCTGCAATTTTCAATAATGTCTCTGTGTCTCGTGTACGATACATTTCATTGTACCCTGCTGGTTTACTCTGGTTTGTTTCTATAGCTGATATACAAGTATGAATAGATCTATTAATATTTTTGATgccttaaaaaaaaatgaaatactttaCAGTGTACCAACAATGCATAATAAATACTCTCCCGATGTCCCTAAAACACTAGTCAAGCATCACACACCTTTCAGACATATGATATGAAAGTTGTCTTTTAAAATAAACTTGTAAAATATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9590 lncRNA downstream 195 8912151 ~ 8917673 (-) False G7820
TU9591 lncRNA downstream 435 8912151 ~ 8917433 (-) False G7820
TU9592 lncRNA downstream 435 8912151 ~ 8917433 (-) True G7820
TU9557 lncRNA downstream 27627 8889375 ~ 8890241 (-) True G7804
TU9545 lncRNA downstream 39645 8875696 ~ 8878223 (-) True G7794
TU9664 lncRNA upstream 2108 9024172 ~ 9092556 (-) True G7887
TU9711 lncRNA upstream 68512 9090576 ~ 9091604 (-) True G7931
TU9778 lncRNA upstream 112982 9135046 ~ 9135312 (-) True G7975
TU9758 lncRNA upstream 159391 9181455 ~ 9194698 (-) False G7965
TU9759 lncRNA upstream 159391 9181455 ~ 9194911 (-) False G7965
LOC110531731 mRNA downstream 49973 8864188 ~ 8867895 (-) False LOC110531731
XM_036989296.1 mRNA downstream 57657 8852578 ~ 8860211 (-) True LOC110514872
XM_036988675.1 mRNA downstream 74818 8839274 ~ 8843050 (-) True LOC118966084
XM_036988599.1 mRNA downstream 74901 8834722 ~ 8842967 (-) False LOC118966084
XR_002474663.2 mRNA upstream 188432 9210496 ~ 9220180 (-) False LOC110531326
XR_005053569.1 mRNA upstream 192342 9214406 ~ 9220189 (-) False LOC110531326
XM_021614349.2 mRNA upstream 233514 9255578 ~ 9273857 (-) True htr2b
XM_036989984.1 mRNA upstream 287289 9309353 ~ 9383943 (-) False LOC110530621
XM_036989910.1 mRNA upstream 287289 9309353 ~ 9384061 (-) False LOC110530621
TU8936 other downstream 542304 8330314 ~ 8375564 (-) False LOC110529747
TU8825 other downstream 733935 8164276 ~ 8183933 (-) False G7184
TU8827 other downstream 733935 8182308 ~ 8183933 (-) True G7184
TU8401 other downstream 878405 8039179 ~ 8039463 (-) True G6810
TU8272 other downstream 1032868 7884343 ~ 7885000 (-) True G6706
TU9788 other upstream 131206 9153270 ~ 9153947 (-) True G7985
TU9756 other upstream 159391 9181455 ~ 9183034 (-) False G7965
TU9757 other upstream 159391 9181455 ~ 9183034 (-) False G7965
TU10337 other upstream 545877 9567941 ~ 9590586 (-) True G8455
TU12268 other upstream 2540673 11562737 ~ 11563125 (-) True G10263

Expression Profile