RNA id: XM_036933221.1


Basic Information

Item Value
RNA id XM_036933221.1
length 5677
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC118966784
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9450932 ~ 9460358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactggagactttggcatTATCTTTTTTTAATCCGCACAAATGATCGAAatggcaggctactttgacactgacaaacttagtatctgagatcaataaaaacgaccttgtcttgaatccatcaatagcctataggcctaggtTTGTGGAGAAACATATagtaggctacaatatgaggaggaaattagtcctaaaaatgctttccagtttcactgactcacccaatgatgcgcagctcactCGCTGGAGATTGTCGATGCGCTCGTGTCAAaagcctatctctccctctctctgttttgtaaaacaatgtttgggagttgatcaaatattttggtagtcTACAGCATAGTCTTATCTTTTCAGCAACAGTCATTGTTTTTCAATCTGTGTTTTCCctcgattgtatttgaaatattgcaaaAGGCCCGTTTTGTCTGCCTGCTGttttttcactgacagatttgcctcGCGTTCCCGACTGTAGGCTATTCTTTGTTATTGGGCTACAAACCGCAGCTAGGCTATTTAAAAAAGAAGCTATTGGTCCTCTGTAGCTAAATTATAGGGCTTCTCATGACGTATTAGGCTATTCTGAATGATTtaatttatttctgaacagacagcagtaattccGTAACTTTAGAAAATTCCTCCAGAACCCTTCATGcagctatgattctataaggaaacaAATGATGAAGTGCAACTCTGGAGAGATGAGGGGGCAGGATAATTGACGAAGAGGCAACTCGAATGAACTTTGATCGCTTTTATTATAATTGTTACATAGCAAAAAGTGAAAATTATTTTTCATGGCACGAGAGGTACCGGATTCGGGCAAGTAGGTTCCGGAACAAAACAGTCCAGAACGGAACGGTGCCGGATCCTGTTCTGGCATGATCctgctcaaattaagcactgatTTGAAGTACCTAGGCCTCTACCTGCTGAGTATAAAGATTATTAAACTAGATTCAGTGGGCTTGTCATTCACAGTACTGATGAAAAATCAAGTACAGTTGATCTAAATGTGGATATACGAGGACATCTAGTGGTCACCTGATTTTTTAAAACTCATGCAAGCTATCTTTGCACTAGCATGCGATGCCATATATTTGACGCAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACATTGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAGGAGTGCCTCCGCAAGTCAAACCTCTCTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGTTGACTGAGAGCATGGTGACAGAGCTGGCTGTTAAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCACCATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACCAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCGTTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGACAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCAAAAATGCTGAGTTCAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTATTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGAGATGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCAAAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTCGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTTCAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAGGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAATGTCTACTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCGACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACATCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCACTAGTCATGAGTTCCAAACCAAAGCTGAGAAAGGAGTGAGTGATGTCATCTCTAGATCATTTAACATTGTGGAGGACGCTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaagcCATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCTTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCACGCTCTTCTATCTCTCTAACACCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCACATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAATGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTTAACACAAAGGGTTCCAAGAATGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCACATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9887 lncRNA upstream 83833 9366476 ~ 9367099 (+) True G8075
TU9838 lncRNA upstream 135508 9312415 ~ 9315424 (+) False G8032
TU9839 lncRNA upstream 135508 9312415 ~ 9315424 (+) False G8032
TU9840 lncRNA upstream 135508 9312415 ~ 9315424 (+) True G8032
TU9836 lncRNA upstream 146822 9303962 ~ 9304110 (+) True G8031
TU9955 lncRNA downstream 22870 9483228 ~ 9483574 (+) True LOC110510917
TU9964 lncRNA downstream 56497 9516855 ~ 9557160 (+) True G8142
TU9967 lncRNA downstream 60429 9520787 ~ 9561179 (+) True G8143
TU9968 lncRNA downstream 66138 9526496 ~ 9677481 (+) True G8144
TU9981 lncRNA downstream 113287 9573645 ~ 9574529 (+) True G8157
XM_036990199.1 mRNA upstream 14053 9428517 ~ 9436879 (+) False LOC118966743
XM_036990127.1 mRNA upstream 14053 9429301 ~ 9436879 (+) False LOC118966743
XM_036990165.1 mRNA upstream 14053 9429301 ~ 9436879 (+) False LOC118966743
XM_036990224.1 mRNA upstream 14053 9429301 ~ 9436879 (+) False LOC118966743
XM_036990271.1 mRNA upstream 14053 9429301 ~ 9436879 (+) True LOC118966743
XM_036990390.1 mRNA downstream 3688 9464046 ~ 9471323 (+) True LOC118966781
XR_005034203.1 mRNA downstream 16330 9476688 ~ 9477259 (+) True LOC118936726
XM_036933405.1 mRNA downstream 20681 9481039 ~ 9483610 (+) False LOC110510917
XR_005034212.1 mRNA downstream 28592 9488950 ~ 9489521 (+) True LOC118936730
XM_036933356.1 mRNA downstream 32963 9493321 ~ 9496279 (+) True LOC118936706
TU8596 other upstream 1195054 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1220697 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1413778 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1565025 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1725323 7725046 ~ 7725609 (+) True G6434
TU10089 other downstream 523417 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 525024 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 680886 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2016306 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3778255 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile