RNA id: XM_036938312.1


Basic Information

Item Value
RNA id XM_036938312.1
length 1454
RNA type mRNA
GC content 0.61
exon number 5
gene id LOC118937727
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9557345 ~ 9576558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaagagagaagaagaggggatgaGGAGGGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATCCTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGTGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGgggcTACTCTACGGTTAGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACATCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCGCGGCCAGCTCACCATCCTCAAACTCTTTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCGGGATCCCCAGGGTCGTGACCCCCTCAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTTCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatggGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10326 lncRNA downstream 17292 9539746 ~ 9540053 (-) True G8445
TU10218 lncRNA downstream 250102 9306992 ~ 9307243 (-) True G8349
TU10216 lncRNA downstream 251370 9305638 ~ 9305975 (-) True G8347
TU10213 lncRNA downstream 254637 9302469 ~ 9302708 (-) True G8344
TU9814 lncRNA downstream 318690 9238422 ~ 9238655 (-) True G8011
TU10344 lncRNA upstream 2021 9578579 ~ 9626379 (-) True G8460
TU10368 lncRNA upstream 124706 9701264 ~ 9724238 (-) True G8479
TU10410 lncRNA upstream 281269 9857827 ~ 9861457 (-) True LOC110514871
TU10424 lncRNA upstream 333328 9909886 ~ 9931006 (-) True G8532
TU10440 lncRNA upstream 405660 9982218 ~ 9982559 (-) True G8547
XM_036937605.1 mRNA downstream 64 9516212 ~ 9557281 (-) True LOC110515168
XM_036937672.1 mRNA downstream 30923 9515908 ~ 9526422 (-) False LOC110515168
XM_036937548.1 mRNA downstream 30923 9516212 ~ 9526422 (-) False LOC110515168
XM_036937637.1 mRNA downstream 30923 9516212 ~ 9526422 (-) False LOC110515168
XM_036989297.1 mRNA downstream 52000 9497513 ~ 9505345 (-) True LOC118966297
XR_005035007.1 mRNA upstream 546 9577104 ~ 9585383 (-) False LOC110515622
XR_005035011.1 mRNA upstream 1140 9577698 ~ 9585383 (-) False LOC110515622
XR_005035022.1 mRNA upstream 2384 9578942 ~ 9585383 (-) False LOC110515622
XR_005035032.1 mRNA upstream 5549 9582107 ~ 9585383 (-) True LOC110515622
XM_036937073.1 mRNA upstream 71975 9648533 ~ 9656019 (-) False LOC110511241
TU9756 other downstream 374311 9181455 ~ 9183034 (-) False G7965
TU9757 other downstream 374311 9181455 ~ 9183034 (-) False G7965
TU9788 other downstream 403398 9153270 ~ 9153947 (-) True G7985
TU8936 other downstream 1181781 8330314 ~ 8375564 (-) False LOC110529747
TU8827 other downstream 1373412 8182308 ~ 8183933 (-) True G7184
TU12268 other upstream 1986179 11562737 ~ 11563125 (-) True G10263
TU12351 other upstream 2068522 11645080 ~ 11645703 (-) True G10343
TU12850 other upstream 2279152 11855710 ~ 11856390 (-) True G10776
TU12868 other upstream 2296547 11873105 ~ 11873891 (-) True G10792
TU13053 other upstream 2610346 12186904 ~ 12205391 (-) False LOC118938491

Expression Profile