RNA id: XM_036935868.1


Basic Information

Item Value
RNA id XM_036935868.1
length 4289
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110522382
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9564492 ~ 9572580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGTATGTTCTGTTTTCTTTGGTACTATCACACCTTCAAGGAAATAGGATCAAATTAGAAACTGATCAATCGGAAAAAAATGTTCAGTGCTAGAAAAGTTGTCACATTGCAATTTTGCCAAAACAACTGACACAAAGCAAGTATAACTTCACGATCAggcaaataattaaataaaaactaTTCTGCCACGCATCCTGATATGACAACATTTATAACAATATTGTTTTCAGGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTATCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGCTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAAAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACGAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGACGATCTTGATGCCCTGATAAGCAAATACGAGAGCAGCTACAATATTGGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTTGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagacatttgtAGAGGGTGTTCTGGCTCAGCTTGGGGATATCTCCCATTCCAGGTCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCTCAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAAAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgacGTCCAGGAAAATGCACAAAAGCTACAGAGTAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGCAGACATTAAAGGACTTCATCATTCACCAGCGGAGGTCAgacatgcagagaagaatgtctaGTCATATACCCACAGAGGACTCTGGAAATCTTGGGACTAAGGAGTACCTTGGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTAATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACATCTACTATAGTCTGCAAAGTAAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAGCACTTGGTTCAATCCAAATCTTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAAGAAAGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttgCCCTACTGTGTACTTTACAGAGACGATGACAAGATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCACATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9967 lncRNA upstream 4700 9520787 ~ 9561179 (+) True G8143
TU9964 lncRNA upstream 8719 9516855 ~ 9557160 (+) True G8142
TU9955 lncRNA upstream 82305 9483228 ~ 9483574 (+) True LOC110510917
TU9887 lncRNA upstream 198780 9366476 ~ 9367099 (+) True G8075
TU9840 lncRNA upstream 250455 9312415 ~ 9315424 (+) True G8032
TU9981 lncRNA downstream 1065 9573645 ~ 9574529 (+) True G8157
TU9982 lncRNA downstream 3256 9575836 ~ 9788175 (+) True G8158
TU9990 lncRNA downstream 22268 9594848 ~ 9647813 (+) True LOC118937346
TU9992 lncRNA downstream 29443 9602023 ~ 9602478 (+) True G8167
TU9988 lncRNA downstream 50487 9623067 ~ 9623904 (+) True LOC118937363
XM_021595311.2 mRNA upstream 10101 9552260 ~ 9555778 (+) True LOC110517099
XM_036989298.1 mRNA upstream 14832 9544337 ~ 9551047 (+) True LOC118966312
XM_036934404.1 mRNA upstream 30880 9527471 ~ 9534999 (+) False LOC118936861
XM_036935428.1 mRNA downstream 13883 9586463 ~ 9595241 (+) False LOC118937346
XM_036935471.1 mRNA downstream 13883 9586463 ~ 9595241 (+) False LOC118937346
XM_036936912.1 mRNA downstream 34050 9606630 ~ 9609304 (+) False LOC118937622
XR_005034856.1 mRNA downstream 34050 9606630 ~ 9609304 (+) True LOC118937622
XM_036935700.1 mRNA downstream 41075 9613655 ~ 9623690 (+) False LOC118937363
TU9946 other upstream 105926 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1310001 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1335644 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1528725 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1679972 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 411195 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 412802 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 568664 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1904084 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3666033 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile