RNA id: XM_036935471.1


Basic Information

Item Value
RNA id XM_036935471.1
length 5376
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC118937346
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9586463 ~ 9647813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCAGCACTAACGGATACCGGGAAATAGAAATAAGAGAACCGGTCACGAATGCGGAGCCACGCCCTAAAATAACATGTGACCACAAGGCGTTTGTGACGCATTCATGCGTTCCAATTTTGTCataattgtctgtaggttctaaaTTGCTTATGAGCTTGGCTGCCCTTCAGAAAGTAGCTGATTCTTGTACTTTACAGCTGTATTTTCCTACAGTTACTAATAATACTAGCAACAAAACAGATTTCATTCCTTAAAATGATATTGCCAGATGGAAGAAAATAATAAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACTTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTGTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGAAAAACTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTGTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAATTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAATGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCAAGTCAAACCTCTCTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGACAGCATGGTGAGAGAGCTGGCTTTTAAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGGAAGTCATGACCACCATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACGAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATTAGGAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGCCAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCTTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAACGATTATTTCGACAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCACAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGAACTGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATAGTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCAAAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATAATGAGCAGAATGTCTAGTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGTTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTAATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTTCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGCCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGAAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCACATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGTTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCATATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGTCACCAGTGACATTGTAGAAGGGGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAAGAAAGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAAACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCCCATTCAAATCTTCAAGGAAAACCAAATTTATTTAATTAAATTCCTCATGATAAACAACGAGAGCATTCATTTGTTCAGATGAGAATCtaatcgtattggtcacatacgccgAAAACAACTGTGAGATGCTTTAttacgagcccattcccaacaatgcagagttaaaaagtaagaaaatattttctaaatagtaacacaataacaataacaaggctatatacaaggagtaccagtaccgagtcaatgtgcatgggtgcgaggtagttgaggtaatacagtatgtacatgtaggtaagggtaaaagtgactaggcaatcaggatagataataaacacagtaGCAGCAGCTAGTGTGAAAGTCGGTCAGTGTcacagtgaatgtgtgggtagagtgtagTGAGTGTGCATCGAGCCAATTCAAGAGAGTCAGTGGAAAACAATTAGAAAAATACATCAATAAccaagggggtcaatgcaaatagtgcaggtggccatttaattaacgttcatcagtctgatggcttgggggtagaagctgttcagcagtctaatgacttgggggtagaagctgttcagcagtctaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9981 lncRNA upstream 11934 9573645 ~ 9574529 (+) True G8157
TU9967 lncRNA upstream 25284 9520787 ~ 9561179 (+) True G8143
TU9964 lncRNA upstream 29303 9516855 ~ 9557160 (+) True G8142
TU9955 lncRNA upstream 102889 9483228 ~ 9483574 (+) True LOC110510917
TU9887 lncRNA upstream 219364 9366476 ~ 9367099 (+) True G8075
TU9992 lncRNA downstream 6782 9602023 ~ 9602478 (+) True G8167
TU9988 lncRNA downstream 27826 9623067 ~ 9623904 (+) True LOC118937363
TU10009 lncRNA downstream 80977 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA downstream 93669 9688910 ~ 9690104 (+) True G8176
TU10018 lncRNA downstream 110955 9706196 ~ 9785562 (+) False G8191
XM_036935798.1 mRNA upstream 13883 9564492 ~ 9572580 (+) False LOC110522382
XM_036935759.1 mRNA upstream 13883 9565393 ~ 9572580 (+) False LOC110522382
XM_036935836.1 mRNA upstream 13883 9565879 ~ 9572580 (+) False LOC110522382
XM_036935868.1 mRNA upstream 13883 9565879 ~ 9572580 (+) True LOC110522382
XM_021595311.2 mRNA upstream 30685 9552260 ~ 9555778 (+) True LOC110517099
XM_036936912.1 mRNA downstream 11389 9606630 ~ 9609304 (+) False LOC118937622
XR_005034856.1 mRNA downstream 11389 9606630 ~ 9609304 (+) True LOC118937622
XM_036935700.1 mRNA downstream 18414 9613655 ~ 9623690 (+) False LOC118937363
XM_036935356.1 mRNA downstream 42502 9637743 ~ 9668473 (+) False LOC118937339
XM_036935247.1 mRNA downstream 43411 9638652 ~ 9668473 (+) False LOC118937339
TU9946 other upstream 126510 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1330585 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1356228 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1549309 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1700556 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 388534 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 390141 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 546003 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1881423 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3643372 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile