RNA id: TU9990


Basic Information

Item Value
RNA id TU9990
length 323
lncRNA type read_through
GC content 0.53
exon number 2
gene id LOC118937346
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9586463 ~ 9647813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taacacaataacaataacaaggctatatacaaggagtaccagtaccgagtcaatgtgcatgggtgcgaggtagttgaggtaatacagtatgtacatgtaggtaagggtaaaagtgactagtcaatcaggatagataataaacacagtaGCAGCAGCTAGTGTGAAAGTCGGTCAGTGTcacagtgaatgtgtgggtagagtgtagTGAGTGTGCATCGAGCCAATTCAAGAGAGTCAGTGGAAAACAATTAGAAAAATACATCAATaacaaagggggtcaatgcaaatagtgcaggtggccatttaattaacgttcagcagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9981 lncRNA upstream 20319 9573645 ~ 9574529 (+) True G8157
TU9967 lncRNA upstream 33669 9520787 ~ 9561179 (+) True G8143
TU9964 lncRNA upstream 37688 9516855 ~ 9557160 (+) True G8142
TU9955 lncRNA upstream 111274 9483228 ~ 9483574 (+) True LOC110510917
TU9887 lncRNA upstream 227749 9366476 ~ 9367099 (+) True G8075
TU10009 lncRNA downstream 28405 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA downstream 41097 9688910 ~ 9690104 (+) True G8176
TU10018 lncRNA downstream 58383 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA downstream 58383 9706196 ~ 9726596 (+) True G8191
TU10036 lncRNA downstream 124251 9772064 ~ 9794426 (+) False G8200
XM_036935798.1 mRNA upstream 22268 9564492 ~ 9572580 (+) False LOC110522382
XM_036935759.1 mRNA upstream 22268 9565393 ~ 9572580 (+) False LOC110522382
XM_036935836.1 mRNA upstream 22268 9565879 ~ 9572580 (+) False LOC110522382
XM_036935868.1 mRNA upstream 22268 9565879 ~ 9572580 (+) True LOC110522382
XM_021595311.2 mRNA upstream 39070 9552260 ~ 9555778 (+) True LOC110517099
XM_036937914.1 mRNA downstream 10625 9658438 ~ 9660129 (+) False LOC118937687
XM_036937957.1 mRNA downstream 10625 9658438 ~ 9664126 (+) True LOC118937687
XM_036934608.1 mRNA downstream 29981 9677794 ~ 9705942 (+) False LOC118937070
XM_036934605.1 mRNA downstream 30953 9678766 ~ 9705942 (+) False LOC118937070
XM_036934606.1 mRNA downstream 30957 9678770 ~ 9686242 (+) False LOC118937070
TU9946 other upstream 134895 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1338970 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1364613 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1557694 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1708941 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 335962 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 337569 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 493431 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1828851 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3590800 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile