RNA id: XM_036935940.1


Basic Information

Item Value
RNA id XM_036935940.1
length 5093
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC118937370
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9917155 ~ 9924757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATATGAGAACCGGTCACGAATGCGGAGCCACGCCCTAAAATAACATGTGACCACAAGGCGTTTGTGACGCATTCATGCGTTCCAACTTTGTCataattgtctgtaggttctaaaTTGCTTATGAGCTTGGCTTCCCTTCAGAAAGTAGCTGATTCTTGTACTTTACAGCTGTATTTTCCTACAGTTACTAATAATACTAGCAACAAAACAGATTTCATTCCTTAAAATGATATTGCCAGATGGAAGAAAATAATAAGGTAGGCCTAAACTGTAATAAGATATACCTTAAAGACTGCTTGTGTTTAATCCTGAATCCAGTTGCCCCTCTTGTACTGGGATAAAACAATAGGCAAGCCATGAACCTTATGGAGGAGTACATGTGTTTTGTAGACACACCTGGGTTCTAGACTGGCTGAGGTAAACATTTTAGGAAAGCCTGGGTTTTTAATATCGAAGTCATTCTAAGGGGTAGGTTTGACAAAGcaaatgagtgagtgagtcttTGACATGAAGACAGTGGTTAGATTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCATGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTATGGAGCAGGAAGAGGAACAAGAACAGGAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTACAGGACAGCCTGCAAGATTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTACAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACAAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGCAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAACAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCGTCCAAAACAACTTGAAAGATTATTTCAGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAAACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagacatttgtAGAGGGTGTTCTGGCTCAGCTTGGGGATATCTCCCATTCCAGGTCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGTAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCACCAGCGGAGGTCAgacatgcagagaagaatgtctaGTCATATACCCACAGAGGACTCTGGAAATCTTGGGACTAAGGAGTACCTTGGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACAGAAACAGACGAGGTTCTACTGACCAATAGTACCAAAGAGGTAATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTTCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCacgctcctccatctctctaacacCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAATGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAAGAAAGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCACATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10063 lncRNA upstream 1762 9859404 ~ 9915393 (+) True G8225
TU10036 lncRNA upstream 122729 9772064 ~ 9794426 (+) False G8200
TU10018 lncRNA upstream 131593 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA upstream 190559 9706196 ~ 9726596 (+) True G8191
TU10009 lncRNA upstream 218612 9676218 ~ 9698543 (+) True LOC118937357
TU10076 lncRNA downstream 3082 9927839 ~ 9947260 (+) True G8238
TU10105 lncRNA downstream 83253 10008010 ~ 10008505 (+) True G8263
TU10106 lncRNA downstream 84263 10009020 ~ 10009350 (+) True G8264
TU10107 lncRNA downstream 86259 10011016 ~ 10011230 (+) True G8265
TU10108 lncRNA downstream 87093 10011850 ~ 10012067 (+) True G8266
XM_036936004.1 mRNA upstream 9270 9900861 ~ 9907885 (+) False LOC118937372
XM_036934597.1 mRNA upstream 27344 9878726 ~ 9889811 (+) True LOC110510777
XM_036934077.1 mRNA upstream 48048 9861152 ~ 9869107 (+) False LOC118936775
XM_036934147.1 mRNA upstream 48052 9861152 ~ 9869103 (+) False LOC118936775
XM_036989302.1 mRNA downstream 12408 9937165 ~ 9945082 (+) True LOC118966382
XM_036935035.1 mRNA downstream 31921 9956678 ~ 9964323 (+) False LOC118937321
XM_036935087.1 mRNA downstream 31921 9956678 ~ 9964323 (+) False LOC118937321
XM_036935135.1 mRNA downstream 32954 9957711 ~ 9964323 (+) False LOC118937321
XM_036935193.1 mRNA downstream 32954 9957711 ~ 9964323 (+) True LOC118937321
TU9946 other upstream 457202 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1661277 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1686920 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1880001 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 2031248 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 59018 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 60625 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 216487 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1551907 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3313856 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile