RNA id: XM_036989302.1


Basic Information

Item Value
RNA id XM_036989302.1
length 4421
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC118966382
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9937165 ~ 9945082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGAAGAGGCAACTCGAATGAACTTTGATCGCTTTTATTATAATTGTTACATAGCAAAAAGTGAAAATTATTTTTCATGGCACGAGAGGTACCGGATTCGGCCAAGTAGGTTCCGGAACAAAACAGTCCAGAACGGAACGGTGCCGGATCCTGTTCTGGCATGATCctgctcaaattaagcactgatTTGAAGTACCTAGGCCTCTACCTGCTGAGTGTAAAGATTATTAAACTAGATTCAGTGGGCTTGTCATTCACAGTACTGATGAAAAATCAAGTACAGTTGATCAAATGTGGATATACGAGGACATCTGGTGGTCAccggatttaaaaaataaaatcatgcAAGCTATCTTTGCACTAGCATGTGATGCCATATATTTGACGCagAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGAAGCAAAGCAGCACTGTggaaaccacagaagaagagagCCTCAACAGTGTGAAAAATCTTGAGTCTTTTTCACTGATTATCAACTTCCTGCAGAACCTAACTGAGGAGCAATGGAGTAGGATTCGTAATGGCATTTCTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCAAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGTGCCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTATGGatcaggaagaggaagaagagcagGAATCACAACAACCTAAGTTCAAGGAGATGTACCTGACTAAGGAGATGGGCAGTCTGGGCAGTGGAAGCTACTGCCCAAAACCATTGCCCAAGCCAGCCATGAGaaccTCTCTGTCTGATGTGCAGAAGAAGACAACCAACTCTGACTCGCTACAAGTCCTTTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTCCGAAGATGACCCCTGCTGTAATGGCAGAAGTGATTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTCAAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACCAACATAATTTGCTGAAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGACGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAATATTGGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGCCAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCGTTCAGTCTGAGTTAACAGCTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGGCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATTCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCACAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCGTCTCAGAGCTTCTGGTCTTGTACAACACTGAGGTGTCAAAGGAGGACCCCCTGTACACTGTTGGAGAAAAAGGATCAGACTTCTCTATTGAGAGACAACAATTTGTAGAGGGCGTTCTGGCTCAGCTTGGGGATATCTCCCATTCCAGGGCCTCATCACCAATAGTATATGAGTTCCCCTGTCAAATTGAGGAGAGCAGAAGTAAGGCCACAGCTTTGACCAGTCTATTAGATTGCATGAAAAAACTCTCAAGTGAGGAAttcaagagagacaccactcaaGCAGTGAGTGGGTTCCTAGTTAAAAAGTCCAACAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAAGTCTTGTTCCGTTCAAAACCAGAGAACCTTGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCGAAAGAACAGGATCTGGTCTGCTACTACTAGTTTATATAAAAATATTAAGAAGACATTAAAGGGCTTCACCATTCACCGGCAGAGGTCAGACGTGCAGAGAAGAATGTCTAGCCGTACACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAACTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAATGACATCTCCTTGTCAAGGTCCCGAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTATGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAATGTCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACAATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCATCCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACCTTTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGTTTCTCCAGATATTTGTTGAAGAGACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10034 lncRNA upstream 3610 9793843 ~ 9933555 (+) True G8200
TU10069 lncRNA upstream 5719 9892417 ~ 9931446 (+) True G8231
TU10072 lncRNA upstream 11664 9907806 ~ 9925501 (+) True LOC118937372
TU10063 lncRNA upstream 21772 9859404 ~ 9915393 (+) True G8225
TU10036 lncRNA upstream 142739 9772064 ~ 9794426 (+) False G8200
TU10105 lncRNA downstream 62928 10008010 ~ 10008505 (+) True G8263
TU10106 lncRNA downstream 63938 10009020 ~ 10009350 (+) True G8264
TU10107 lncRNA downstream 65934 10011016 ~ 10011230 (+) True G8265
TU10108 lncRNA downstream 66768 10011850 ~ 10012067 (+) True G8266
TU10094 lncRNA downstream 105959 10051041 ~ 10053076 (+) True G8253
XM_036935940.1 mRNA upstream 12408 9917155 ~ 9924757 (+) True LOC118937370
XM_036936004.1 mRNA upstream 29280 9900861 ~ 9907885 (+) False LOC118937372
XM_036934597.1 mRNA upstream 47354 9878726 ~ 9889811 (+) True LOC110510777
XM_036934077.1 mRNA upstream 68058 9861152 ~ 9869107 (+) False LOC118936775
XM_036935035.1 mRNA downstream 11596 9956678 ~ 9964323 (+) False LOC118937321
XM_036935087.1 mRNA downstream 11596 9956678 ~ 9964323 (+) False LOC118937321
XM_036935135.1 mRNA downstream 12629 9957711 ~ 9964323 (+) False LOC118937321
XM_036935193.1 mRNA downstream 12629 9957711 ~ 9964323 (+) True LOC118937321
XM_021592072.2 mRNA downstream 35445 9980527 ~ 9982610 (+) False LOC110510920
TU9946 other upstream 477212 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1681287 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1706930 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1900011 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 2051258 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 38693 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 40300 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 196162 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1531582 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3293531 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile