RNA id: XM_036939042.1


Basic Information

Item Value
RNA id XM_036939042.1
length 2052
RNA type mRNA
GC content 0.54
exon number 6
gene id asb3
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10096943 ~ 10101637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCGGGCCGCTGGATGGGCGGAGTTTTCACTTTTAGTCCAATGATAGGGTATACATCGAGTGTGTACGGAAGTGATTCAACGCGGGTGTTTTGTCGATGTTGCAAACAGCTGAGAAGACGAGAAAAGGTGAGAGGTAAGGAGGATGGACTTTACTGAGTGTTACAGCGACACGGTGTCCAGTCTTGCCGTGGCAGCACGCGAGAGAAATGTCAGGCGTGTGAGCTTACTGATCCAGAGAGGCTGCAGTGTGGACAGCAGGGATAACCGTGGCTGGAACGCCCTCCACGAGGCTGCAGCCGCCGGAACCATCGTATGTGTGCGCCAGCTACTTAAGGCTGCCGCAGGAGCCTCCAGTGGTTGCCGTGCCTACGTGGGCTCTCTGACACATGAGGGTGAGTCGGCGTTGTACCTGGCCGTGCAACGCAGACACCTGGCCGTGGTCAAGCTCCTCCTCAGAGCACACGCTGACATCAACCAGCCAACCAATGACCTGTCCTGCCCTCTCTACGCTGtggaCTGCGGGCACACAGATATCGTGGAGTTGCTGGTGCGGAAAGGGGCAGAGGTTAACGGAACACACACGGCCTCCTGCTGGACCTGCCTTCATCAGGCTGCCTATAAAGGTCACAGTGACATTGTGCGTATCCTGGTGGGCGTGTGTCGCCTGGAGGTGTTTGACGACCACATGATCACTCCCCTGTTTGTGGCTGCACAGTACGGACAAAAGCAGTGTCTCCAGATCCTCGCTGACGCAGGTGCCAATGTGAACGCCCAGGCGTCAGACTTGGCAACACCGCTGCTGATTGCATCACAGGAGGGCCACGAGGGCTGTGTGGAGATTCTTCTGGACCACAATGCCAACCCAAATCTGTCTTGTTCCAACAACTGGCCACAGCTCCCCATCCACGCAGCTGCCGAGTTCGGCCACAACACTGTCCTGGCCAGGCTGATTGCTGTGACACACCGGGTGTGTGACCGTGGAGAGGGTGAGTTGAGTCCGCTGTACTCTGCTGTGAAGAACAATCACAGCCACTGTGTAGATCTGCTGCTGAGGGCCGGCTTCAGCCCAGACGCCCAGGACTGTAGCTCCCTCTTCAGCTCAGACACCACATCGCCGCTCGCCTACACCCTGGCCTTGAAATGCACATCCTCCCAGCCCTTTAGCGATTCGGCACGCTTGCTGGTAGCCGCAGGGGCCACTTTGACCGGGCGGGAATGGTTCTACATTCTGGCCATGTGCAAATCCGATGTGCTGCAGTATGTCTTACAACAAAGGAGCATCCCCAGACCAGATCAGCTAAGCAGGACCATCTCGCTCTGCTCTAGGCCAGAGCAGCAGAGCAACAGCCCACTCAGTCCAGAAGAGTTGCGTGGGCTGGTGTGTGAGGCGCTCGACATGGTATGCCATGCCTCCTACTGGTTGCCCACGCTACTTCAGGCAGGCCTGGAGCCCTCCCTACTGTTGCAGAAACCTTACACCCTGAGGAAGGCAGACAGTGAGGTTTTGAATTACTTCCTCCAGTTTGTCAATTGGTCGACTCTCTCTCACCCACTAAAGGAGATACTGCTACCCCGAAAGGAGAGCACCTGGAGGCCACATCACGagtgtgtgccatctctctctcacctctgcaGGCTGCGGGTCAGGGAAGAGTTAGGTTCAGTGGTTCTGATGCAGACAGCTGTGGTCCGACAgcttcctcttccccctccactGCAGATATACCTCCAGTTCAGAGACATCCCACCACCCTCGCACGCAACAACAGTCCCACAGGGAGGGTTTCCACAGCGACTATAACGATGCCATACAGGGCTTCATATAACCTGCCACTGAAGAGATGTCCTCAATTCAAAAAATATCCACACATACCCAGTTCCCTATGCACACACCTGTTCTATGTTTCTGTTCTGTTGATGTGTGGTTTTGGAATAGATCAGCTCTACTTGAACACTGATGTTGgtgaaaatgaatatttttaTATTCTTTGTAGAATTGCCTGTATGGTTTGTTTTGATTATTGTTAATTAAAACAAAATATCAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10148 lncRNA upstream 13276 10081168 ~ 10083667 (+) True G8295
TU10094 lncRNA upstream 43867 10051041 ~ 10053076 (+) True G8253
TU10108 lncRNA upstream 84876 10011850 ~ 10012067 (+) True G8266
TU10107 lncRNA upstream 85713 10011016 ~ 10011230 (+) True G8265
TU10106 lncRNA upstream 87593 10009020 ~ 10009350 (+) True G8264
TU10165 lncRNA downstream 17373 10119010 ~ 10134267 (+) True G8304
TU10493 lncRNA downstream 35697 10137334 ~ 10137566 (+) True G8600
TU10555 lncRNA downstream 118707 10220344 ~ 10222076 (+) True G8651
TU10556 lncRNA downstream 120620 10222257 ~ 10224611 (+) True G8652
TU10603 lncRNA downstream 198245 10299882 ~ 10301188 (+) False G8695
XM_036938825.1 mRNA upstream 186 10087300 ~ 10096757 (+) True ftsj3
XM_036938421.1 mRNA upstream 48266 10012706 ~ 10048677 (+) False LOC110533060
XM_036939156.1 mRNA downstream 2532 10104169 ~ 10107871 (+) False lim2.2
XM_021587979.2 mRNA downstream 2570 10104207 ~ 10107888 (+) True lim2.2
XM_021618308.2 mRNA downstream 38593 10140230 ~ 10162948 (+) False gipc3
XM_036940763.1 mRNA downstream 1331465 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 1331465 11433102 ~ 11492490 (+) False LOC110523899
TU9934 other upstream 105401 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 112479 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 636990 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1841065 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1866708 8229297 ~ 8230235 (+) True LOC110501328
TU10501 other downstream 39607 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1375027 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3136976 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 3527226 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 3528399 13630036 ~ 13631890 (+) False G12410

Expression Profile