RNA id: XM_021618655.2


Basic Information

Item Value
RNA id XM_021618655.2
length 3748
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110533997
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11412825 ~ 11425966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTGGTTGAAGGAGTCGTATTGATTGAGTCCTCTAAAAACAGTCTACAGAAGAGTTGTGCGTTTGATCCAGAAGTAGTATAGGATTACGTTTTTCACGGTTTAATAAATGCCATATAATTATTTGCATTTGTAAgaaaagaaaataagaaaaacagGGCAGCTGCAATGTGGATTCAAGTGCGCACCATGGATGGCAAGGAGACCCATCGGATCGACTCCCTGTCCAAACTTACCAAGGTGGACGAGCTGCGCCTCAAGATCTTGGAACTCTTTAAGGTTGACCCAGAGAAGCAGAGGCTTTTCTACCGGGGAAAGCAGATGGAGGACGGCCACACAATCTTTGATTACAACGTGGGTTTGAACGACATAGTGCAGCTGCTTGTTAGACAGGCCGCGCCCCCTGCTGCTGTCCTCAAAAGCAAGGACAAAGAGGCCGAGCTGTCCGACTCTGACTCTGGCTGTAGCTCTGCGCAGAGTGAGTCAGACAAGAGCTCCACCCACGGGGAGGCCGAGGTGCAGGCAGCTGGCACCTCCACCCAAACCGACTTGCCAGACCTGGTCGACCCCGGCTTTGGCTGTTACAAGATTAACGAGTTTGTTGATGCCAGAGACTTGAACATGGGTGCCTGGTTTGAGGCCCAAATTGTGAACGTTACAAAGACATCTGGAGAGGAGGGCTCTGACACGAAACCCAGCGAAGAGGAAGTTATTCACTACCATGTCAAATATGAAGACTACCCAGAGAATGGTGTGGTGCTGCTGCATTCCAAGGATGTGCGCCCGCGTGCTCGCACTGTCTACCAGTGGCACCAGCTAGAGGTGGGCATGGTGGTCATGGTCAACTTCAACCCCGACGAACCCAAGGAGCGCGGCTACTGGTACGATGCCCAGATCCAGAAGAAGAGGGAGACACGCACCCTGCACGAGATCTACACCAAAATACTGCTCGGGGATGCCGGTGACTCTCTGAATGACTGTAGGATCATGTTCTTGACTGAAATTTACAAAATCGAGGAGCCTGGAGCATTGGATGGATCTGGAGTTGGATCTGACAGTCCACTGAAAAGGTCAAACGGACCCGAGTGCAAACACTGCAAAGATGACCTCAAAAAGAACTGCCGCTGGTGCAACTGCCACGTTTGCGGTGTGAAGCAGGACCCTGACAAGCAGCTGCTGTGTGACGAGTGTGACATGGCCTTCCACATCTATTGCCTTAACCCCCCACTGACCAGCCTCCCCGATGATGATGACTGGTATTGTCCCGAGTGCCGCAACGATGCCAGTGAAGTGGTCCTAGCAGGAGAGAAACTCAAGGACAGCAAGAAGAAATCCAAGATGGCGTCCGCTAGCTCAACCAGccagagagactggggaaagGGCATGGCTTGTGTCGGCCGCAGCAAGCAGTGCACCATCGTGCCCTCAAACCACTACGGCCCAGTCCCTGGCGTCCCCGTTGGAAGTATTTGGAAGTTCAGGGTCCAGGTGAGTGAGTCTGGTTGCCACAGGCCACATGTAGCTGGGATCCATGGGAGGAGCAACGATGGATCTTACTCCCTAGTGCTGGCAGGGGGTTATGAAGATGACCAGGATAATGGCAACGAGTTCACCTACACCGGCTCAGGAGGACGAGACCTGTCTGGCAACAAGAGGACAGCCGAACAGTCGTGTGATCAGAAGCTCACCAATATGAACAGAGCTCTGGCTCTGAACTGCAACGCGTCGGTGAACGAGAAGGACGGGGCCGAGGCCAAAGACTGGAAGGCAGGCAAGCCGGTCAGGGTGGTGCGCAGCTCCAAGGGCCGCAAGCATAGCAAGTTCAGCCCCGAAGACGGCAACAGATACGACGGCATCTACAAGGTGGTGAAATACTGGCCAGAGAAGGGCAAGTCCGGCTTCCTGGTCTGGAGGTACCTGCTCAAACGAAACGACGACGAGCCAGCGCCATGGACCAGGGATGGCAAGGAACGCATCAAGAAACTGGGACTCACAATGCAGTATCCTGAGGGCTATCTGGAGGCCCAGACTgccaaggagaaggagaaggaaaacAAGGAGAAGGAAAATGAGGTGACTGAAACACCCACCAAAGGAAAGCGGAAGAGAAAGTCTCAGTCTAATGCTGAAGAGAAGTTGTCACCAACCAAGGGAACTCCCAAGAAGATGAAAGTTGAGGCTTATAAACTGACCAAAGAACAGAAGGCTTGGGTCAAGGGTGACGAGTCCAACAGTAAGCTGTGGGGTGAAGCCATGGAGTCTCTGGCCCTTGGCCCGAAATTCCTGAACAAAGTTGAGGAAGTCTTCTCATGTATATGCTGCCAGGAAGTGGTCTTTCAACCTATCACCACTGAGTGCCAACACAATGTCTGCAGGGAATGCCTTCAGCGGTCTTTCAAGGCAGAGGTGTACTCATGCCCGGCATGTAGGCACGATCTGGGGAAAAACAACCCAATGACTGTCAACAATCCCCTCCAAGCCATTCTCAACCAGTTCTTCCCAGGATACAGCAGTGGACGGTGATAACTTGTTCCACATGCTTGACCAGCATGGAGACAACATGAACTATGAGGGAAGTTAAGCATTTCAGTAAAGACAAATAATAACTTTTCCTAATATATTTTACAAATGTAACACTGTCTGTTTGGCGAAATGCCACCCCCTCTTCTCTGGTCCTATGTCATTAACTGTAGTTGATGTAATTAAACTGCCTTGATCAAATGTATCTGTAACATTAATGTTCTTCTGTTAACAATGCATTTTAACTTGAACTGCCAAAATTAATACACAAGTCTAATTCCTTCAAGCACATGTGGTTTGTTTGTTAGAGCAGATAGACATGTTAATCAATTGCATACCCTTTTATTTAGGAAACACTCCCTTATTGAATGTATTTTATATTCTTAAGTTTGATGTCCAATAGAACTGGCCTGAACTTGTGTTTTTCTTAAGCGAAGCACAACTGAAATCTGTAAGCGACCCCATTTAAACAATTTTAAGTGTCGGTATGGATTTGATATTGCAACCCCCCTCGCCCCcaagttattttttaaatgtttatagaAATTACTTGTCATGGTGGATGTGAGGGTCATTTCAGTAACAAATGTACTcgttgttttgtgtgtttactCGTTTACAAaagtttttttacatttattttcccATGTGTAATCTGATGGAGTTAGTGAACATTTGATTTCAATTTGAGGGGAATCTATACCTTTCACTAATCTATACAATTATTGACTTTTGTTCCAATTTATTGTCATAATTATCCCTTTTTAATTGTCAAATGTACGTCACCTTAATCCTTTAACTGCTGTCGAAGCACACTGTTTCTGAACAAGCCCAAAGATGTCATGTGTAACCTTTACTGTTGTGCACAATTCCTGTTTAGGTGTCCCACAAAATGCTTTTGATTCAAGGCAGGGCTATAGAACACTTAAAACACCTAGCTCTGTTAAACTTTTCTCTGGTGGTTCAACAGGAAATATTTAAGACCCAGAATTGAAATTTTGCTCAGTTTATGTTTCTGCTTGTTCTTTTCCAATATTGCAAAATGAATGCCAGTGGCTGCAGATGTTAGTAATACCTCAAATTTACAATTTGCATAAACTGGAAATGTATATTTTCTAAAATTGTAtatttttagaattgttttttGATATGTAGTATTAGAAGTTACTTGCTTGCACATGTTTACCAAGTGCAGAATTTTCCAATAAAACCTTTTTATAAAATGCAA

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007049 cell cycle biological_process
GO:0010216 maintenance of DNA methylation biological_process
GO:0016574 histone ubiquitination biological_process
GO:0031100 animal organ regeneration biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0000791 euchromatin cellular_component
GO:0000792 heterochromatin cellular_component
GO:0005657 replication fork cellular_component
GO:0005737 cytoplasm cellular_component
GO:0044729 hemi-methylated DNA-binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12132 lncRNA downstream 13784 11398676 ~ 11399041 (-) True G10132
TU12115 lncRNA downstream 53925 11357205 ~ 11358900 (-) True G10116
TU12042 lncRNA downstream 97891 11313634 ~ 11314934 (-) False LOC110533913
TU12040 lncRNA downstream 97891 11313872 ~ 11314934 (-) False LOC110533913
TU12041 lncRNA downstream 98634 11313872 ~ 11314191 (-) True LOC110533913
TU12149 lncRNA upstream 3237 11429203 ~ 11429502 (-) True G10149
TU12214 lncRNA upstream 92770 11518736 ~ 11519032 (-) True G10211
TU12228 lncRNA upstream 108932 11534898 ~ 11535356 (-) True G10225
TU12231 lncRNA upstream 111931 11537897 ~ 11538116 (-) True G10228
TU12236 lncRNA upstream 113958 11539924 ~ 11540132 (-) True G10233
XM_036940651.1 mRNA downstream 990 11313871 ~ 11411835 (-) False LOC110533913
XR_005053633.1 mRNA downstream 435663 10977107 ~ 10977162 (-) True LOC118966751
XM_036939683.1 mRNA downstream 790246 10220327 ~ 10622579 (-) False LOC110522842
XM_036939672.1 mRNA downstream 869355 10220327 ~ 10543470 (-) False LOC110522842
XM_036989305.1 mRNA upstream 373449 11799415 ~ 11802397 (-) True LOC110524396
XM_021618896.2 mRNA upstream 384742 11810708 ~ 11819081 (-) False LOC110534151
XM_021619007.2 mRNA upstream 406723 11832689 ~ 11834717 (-) True uts2d
XM_036941676.1 mRNA upstream 620135 12046101 ~ 12052746 (-) False LOC110534884
XM_021619862.2 mRNA upstream 647113 12073079 ~ 12089590 (-) False tab3
TU10337 other downstream 1822239 9567941 ~ 9590586 (-) True G8455
TU9756 other downstream 2229791 9181455 ~ 9183034 (-) False G7965
TU9757 other downstream 2229791 9181455 ~ 9183034 (-) False G7965
TU9788 other downstream 2258878 9153270 ~ 9153947 (-) True G7985
TU8936 other downstream 3037261 8330314 ~ 8375564 (-) False LOC110529747
TU12268 other upstream 136771 11562737 ~ 11563125 (-) True G10263
TU12351 other upstream 219114 11645080 ~ 11645703 (-) True G10343
TU12850 other upstream 429744 11855710 ~ 11856390 (-) True G10776
TU12868 other upstream 447139 11873105 ~ 11873891 (-) True G10792
TU13053 other upstream 760938 12186904 ~ 12205391 (-) False LOC118938491

Expression Profile