RNA id: XM_036940763.1


Basic Information

Item Value
RNA id XM_036940763.1
length 3798
RNA type mRNA
GC content 0.53
exon number 28
gene id LOC110523899
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11433102 ~ 11514427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATTCCGTATAGGAACTTGAAGCACCATAGGCAGTTGTGTCAGTGCTGATTTGGAGGTTGGACTCGTTTCCAGCAAGCAGACATGTCATTCCGATGTCATGCTGTGTCCTTTTTAGTTAGCAAGTTATTAACCAATGTGTACCCTCTGTAAAAATGATTTGAATTGTACGTGAGCGCGAATTtataacacattttcatttacCCGTTGTTGGTAATAGCATTATGTTACGAGTTGGAAGCGCAGTGGCCTGcatgGCCTGCAGAAACCTGGTCTCCCCAAACATGGGGGTGAGGTTCAGGATGCCCTTACAGAAGCTGCACCCTCTGTCTCGTGCCATCCACCACCGGTACAACGCCAGTGTCACCACCCCGCACCGCTCGGCAGCCCGCCACTTCACCTCCATGTCCCGGCTGCCCATGCAGCCCCCCAAGCCTCCCCCGGGCGGTCACGGCGGCTGGCGCTACCAGCAACACCGCAACTTTTGGATGCTCCGCCTGGCCTCCAGGCTGCTCAAGCTCCGGTACATTGTGCTGGGCTCAGCAGTGGGAGGCGGGTATACCGCTAAGAAGACCTATGAGGAATGGAAGGATATGCTGCCTGATATGGATGAATACAACTGGGTAATACCCGATTTCTTCTGGGAGATGAGTAAACAAATTGACCTAGATAAACTAACCAAAATGCTGCCTGAGTTAGTGGAGATTGCCAAGTTTCTACCAGAGTTACCCGATTTAGATAAGATAGGAGAGAACGTCACCTTTCTCAAGAGCATCCTCTTCACCGGTGTTGGTAGTAAAGGAGCTTCTGGTCAGCGTTTTTTGTTAGCCGAAGCCCCTGGGGACACTCCAGTGAAATCTGCCACAGATGCCCCAGTCACGGCCACACCAGAGGCCAGCGGCAAGCAGTTTAGGAAGTCTTCAGACAAGGAGAAGGTGGACCAGCTTCAAGAGGAACTGCTCCGAACTCAGGTGAAGTACCAGCGCAtgctggagagactggagagggagAACAAGGACCTGAGGAAAGTGGTGCTGCAGAAAGATGAGAAGGGTATCCACCAGAGGAAAGTCAAGGTGAGTAAGTCTCTAATTGACATGTACTCTGAGGTCCTGGACATCCTCTCAGACTTTGACTCTAACTACAACACCCAGGACCATCTACCCAGGgtggtggtggtgggagacCAGAGTGCAGGGAAGACCAGTGTGTTGGAGATGATCGCCCAGGCTAGGATCTTCCCCCGGGGCTCTGGAGAAATGATGACCCGCTCTCCTGTCAAGGTGACGCTGAGCGAGGGACCTCACCACGTGGCCATGTTCAAGGACAGCAGTCGAGAGTTTGACCTGGGAAAAGAGGAGGACCTGGCTGCCCTGAGACATGAGATTGAGCTGAGGATGAGGAAGAGTGTCAAGGAGGGACAGACAGTCAGCCCTGAGACGATCTCTCTGAGTGTCAAAGGACCAGGCATCCAGAGGATGGTGCTAGTAGACCTACCAGGAGTCATCAGTACTGTGACTGCAGGCATGGCAGCAGACACCAAGGAGACCATCTTCAGCATCAGTAAGAACTACATGCAGAACCCCAACGCCATCATCCTCTGTAtccaggATGGGTCAGTGGATGCAGAGCGCAGCATCGTCACAGACCTGGTCAGTCAGATGGACCCGCAGGGGAAGAGGACCATCTTTGTCCTGACCAAAGTCGACCTAGCAGAGAAGAACCTGGCCAGCCCTAACCGGATCCAACAGATTGTTGAAGGAAAGTTGTTCCCTATGAAAGCCTTGGGTTACTTTGCTGTGGTGACCGGGAAAGGAAGTGCCGGGGAAAGCATTGACTCCATCAAAGACTACGAAGAGGACTTCTTCCAGAACTCCAGACTACTCAGAGACGGCATGCTGAAGGCCCACCAGGTGACTACTAAGAACCTAAGTCTGGCCGTTTCTGACTGCTTCTGGAAGATGGTCAGGGAGTCAGTGGAGCAGCAGGCCGACGCCTTCAAAGCGTCCCGCTTCAACCTGGAGACAGAGTGGAAGAACAACTACCCCCgtctgagagagctggacaggAATGAACTCTTCGAAAAAGCCAAGAACGAAATCTTGGACGAAGTCATTAGCTTGAGTCAAGTGACACCGAAACACTGGGAGGCCATCCTAGAGAAGAAGCTGTGGGAGCGTGTGTCCATCCACGTCATCGAGAACATCTACCTGCCTGCAGCCCAGACCATGAACTCTGGCACCTTCAACACCACCGTGGACATCAAGCTCAAACAGTGGACGGACAAGCAGCTGCCTCACAAAGCATTAGAGGTTGCCTGGGAGACGCTGCAGGAGGAGTTTGCCCGCTTCATGGCGGAGTACAAAGGGAAGGACCAGGACGACATTTTTGACAAGCTGAAGGAGGCGGTGAAGGACGAGAGTATCAAGAGGCACAAGTGGAACGAGACAGCCATGGACAGCCTGaGGGTGATCCAGCACAATACTCTGGAGGACCGCTCCATCACAGACAAGCCCCAGTGGGACGCAGCCATCCAGTTCATGGAGGAGACCCTGCAGGCACGCCTCAAAGACActgaCTCAGTGATAAATGACATGGCAGGTCCTTACTGGAAACAACGCTGGATGAGCTGGACGAGCCGCTCGCCCGAACAGCACATCTGCAACGAAACCAAAAAGGAGCTGGAGCGCCTGCTAAAACTCCATGAGGACCACACAGCATACCTGGCCAACGACGAGGTCACAACCGTCCGCAAGAACCTGGAGGGTcgaggggtggaggtggaccCTGTCCTGATCAAGGACACGTGGCACCAGCTGTACCGACGTCACTTCCTGCAGAAGGCGCTGCATCACTGTAACCTGTGTAGACGAGGCTTCTACTACTACCAGAGACAATTTGTTGACTCGGAGCTGGAGTGCAATGATGTAGTCCTGTTCTGGAGGATTCAGAGGATGCTGCTCATCACAGCCAACACACTCAGACAGCAGCTCATCAACACAGAGGTCCGGCGCCTGGAAAAGAACGTGAAGGAGGTGCTGGAGGACTTTGGTGAGGACAACGAGAGGAAGGTCCACCTCATCACCGGACGCAGAGTACAGCTGGCAGAAGACCTTAGACTGTTTATACCCCTCCCTGACTGCCAGGGGAGGAAACGGCTTCCGCCATTCCTACAGCTGGATCAGAggccctccattcctcctcctcctctgctctccacaCCTCGGCCAGCCAGCCGCTCCCAGTCCCAGTTACAACCCCCTGCCTtcacctctctcttttcttccccctTCCCCTTCTTCTCTGAGGCTGGGAACCGGGGCTGTCCACGCTCCCTCCGACACCTGGTGTTTTAGTGACCCACTCCGCTCTCTACACACATCCTGCTCCACCACATGTGTTTGACAGCCCTGCTGCAACAGTCTCTGGGTGGGTGTAAATCTGTCCTCACTGGGCCTGAGTGTGTGGATGGGAGAGAGGTGTGTTCTGGGAGACTGTTCAGTCTGTCAGACACCCAGCCAGAAGGAAAAGGGCTAGGCTGTTGGCCCTGCCTTTCCCAGGACCGGCCTCATTACTCTCATCTTGCCTCGTCTTTTCCAAGATCACTGAAGGCAACAGGTGAAAGCAATAATGTTAAAAGTAACCAATCAAGTCCTTTCATTTATCCATGATAATGAAGTAAAGAGCAAAGGAAGCTATTTTTAAACTATTAGGACACAACCTTACCTGTCACCTATCTActgctgaccccatttagtcgattgtttggttgataggctgttggtggactttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11960 lncRNA upstream 56304 11375423 ~ 11376798 (+) True G9980
TU11947 lncRNA upstream 72264 11359287 ~ 11360838 (+) False G9970
TU11948 lncRNA upstream 72999 11359287 ~ 11360103 (+) True G9970
TU11946 lncRNA upstream 73321 11359287 ~ 11359781 (+) False G9970
TU11931 lncRNA upstream 89079 11343014 ~ 11344023 (+) True G9955
TU12210 lncRNA downstream 22695 11515185 ~ 11515414 (+) True G10208
TU12226 lncRNA downstream 41811 11534301 ~ 11534536 (+) True G10223
TU12229 lncRNA downstream 44902 11537392 ~ 11537763 (+) True G10226
TU12239 lncRNA downstream 49249 11541739 ~ 11542096 (+) True G10236
TU12244 lncRNA downstream 52213 11544703 ~ 11544905 (+) True G10241
XM_021618308.2 mRNA upstream 1270154 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 1325214 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 1325231 10104169 ~ 10107871 (+) False lim2.2
XM_036939042.1 mRNA upstream 1331465 10096943 ~ 10101637 (+) False asb3
XM_021618773.1 mRNA downstream 172118 11664608 ~ 11666692 (+) True LOC110534079
XM_036941304.1 mRNA downstream 353229 11845719 ~ 11872791 (+) False ccdc50
XM_036941268.1 mRNA downstream 353229 11845719 ~ 11872796 (+) False ccdc50
XM_036941195.1 mRNA downstream 353231 11845721 ~ 11879266 (+) False ccdc50
XM_036941231.1 mRNA downstream 353232 11845722 ~ 11879266 (+) False ccdc50
TU10501 other upstream 1271816 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1441560 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1448638 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 1973149 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 3177224 8255142 ~ 8255878 (+) True LOC110505168
TU14216 other downstream 1746123 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2136373 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2137546 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2699966 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 3186860 14679350 ~ 14679578 (+) True G13380

Expression Profile