RNA id: XM_021619007.2


Basic Information

Item Value
RNA id XM_021619007.2
length 928
RNA type mRNA
GC content 0.44
exon number 5
gene id uts2d
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11832689 ~ 11834717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCCTTCCATGTCAGACAGGATAAAAGTATGGTTGGGATGGACCAAAGGCAGTAGATCCTTTGGGCAGGTTGAGAACCAGCTGATACTTGAACACTTCTTTGGGACAGTTGCTTCATTGTCATGGACAAGACAGTCTCTGTGAAGTACTGGCTGGGACTGGTAGCCTTCCTGCTCCTACAAGGGGTAGTCAGTGTGGAGGGCAGAAGCATCTTCAACCCTGGAAACCATGTTTATCAGCCAAGGGAAGGCACAGATGGCCAGAACAAGATTCTAGCATTTCTACTACATAAAAGCTTAGAACCTGTTGAAAGAAATTACGCTTTAGGTTTACATTTGGACAACAAACTAGCAGAGTTGGAGGAGCTAGAGGCTTTGACGGAGGGCTTGGAGCTGGAGAGGGAGCTCTCATCCAATGTATTAGCAGAGGACAAGTCCATACCGAGGAAAAGGGATTGTTTCTGGAAGTACTGTGTATGACAGTCTAAGGGAGAGAAACTCTTCTGAGTCCTGCTGCATCGCCCTAACCCTCCAAAGCCTTAAGACTCAATACGCTCACAGACATAAACACAACTCCCCATTACCATCACCAACTGTTGAAATGTTGTAACATAACTAATGCACTCATCGCATATTGTACTGCTGAAGTCGTCAGGACTCGGGCATACTAGCATGACTAAGGCGTACTAGCATTTCTCTAAGACGGAGAGTGCTGTTGTCTTAACCAACGATCTGCTGGCAAAGGCCTTGGTCCATAAAGTTTCCACACCCAGAGGAACCGCCCTCTTCTCAAAATGTTGACTTTGTCTTCCCCTAGTGGTAAATGGGGGCAGTGGTGCAATTCATTTTATTTTCCATAGTCAAATATTATAAAGTATTGCTTTTTGAATGTGTTACTGTTTCCTACATTGAATAAATAATATATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12789 lncRNA downstream 13649 11812466 ~ 11819040 (-) True LOC110534151
TU12792 lncRNA downstream 53624 11778838 ~ 11779065 (-) True G10725
TU12786 lncRNA downstream 57408 11775073 ~ 11775281 (-) True G10719
TU12785 lncRNA downstream 63584 11768729 ~ 11769105 (-) True G10718
TU12770 lncRNA downstream 74820 11757539 ~ 11757869 (-) True G10707
TU12861 lncRNA upstream 37002 11871719 ~ 11871972 (-) True G10787
TU12867 lncRNA upstream 37782 11872499 ~ 11872757 (-) True G10791
TU12857 lncRNA upstream 40328 11875045 ~ 11877997 (-) True G10783
TU12858 lncRNA upstream 44839 11879556 ~ 11881671 (-) True G10784
TU12870 lncRNA upstream 54020 11888737 ~ 11889184 (-) True G10794
XM_021618896.2 mRNA downstream 13608 11810708 ~ 11819081 (-) False LOC110534151
XM_036989305.1 mRNA downstream 30292 11799415 ~ 11802397 (-) True LOC110524396
XM_021618655.2 mRNA downstream 406723 11412825 ~ 11425966 (-) True LOC110533997
XM_036940651.1 mRNA downstream 420854 11313871 ~ 11411835 (-) False LOC110533913
XR_005053633.1 mRNA downstream 855527 10977107 ~ 10977162 (-) True LOC118966751
XM_036941676.1 mRNA upstream 211384 12046101 ~ 12052746 (-) False LOC110534884
XM_021619862.2 mRNA upstream 238362 12073079 ~ 12089590 (-) False tab3
XM_021619898.2 mRNA upstream 238362 12073079 ~ 12089590 (-) False tab3
XM_036941990.1 mRNA upstream 238362 12073079 ~ 12089596 (-) False tab3
XM_036941859.1 mRNA upstream 238362 12073079 ~ 12089760 (-) True tab3
TU12351 other downstream 186986 11645080 ~ 11645703 (-) True G10343
TU12268 other downstream 269564 11562737 ~ 11563125 (-) True G10263
TU10337 other downstream 2242103 9567941 ~ 9590586 (-) True G8455
TU9756 other downstream 2649655 9181455 ~ 9183034 (-) False G7965
TU12850 other upstream 20993 11855710 ~ 11856390 (-) True G10776
TU12868 other upstream 38388 11873105 ~ 11873891 (-) True G10792
TU13053 other upstream 352187 12186904 ~ 12205391 (-) False LOC118938491
TU13056 other upstream 352187 12186904 ~ 12205391 (-) False LOC118938491
TU13135 other upstream 434803 12269520 ~ 12269786 (-) True G11037

Expression Profile