RNA id: XM_036941676.1


Basic Information

Item Value
RNA id XM_036941676.1
length 3576
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110534884
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12042943 ~ 12052746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACTGGAGAAAGAAAAAAGCTTCTGAACGGGCTTTGGCGCGTGCGTAGCAATATAATGGTCTTCGAGGCAATACTGGAGTATAGAGCGCATTCCTAAAGGAAAATAGACACTGTCACCCATCCCAAACAGACCAGAAGGAATCATGGGGAGTGTGTTCTTGCCGTCGGACCTCGCCAACACAGTGCTGAGGCGTTTGCGCAGGGACAACGGCTACCTGTTAGAGGAGATCCGTCAGGGCAACATCCagagagagtgcagagaggaGATCTGCACATACGAGGAAGCCAGGGAGGCCTTTGAGAACGATGAGAAAACTCAACGGTTCTGGGAGGAGTATGTGCGGGAGAGCAGTGGCGGGCAGCAGTTGGAGGGCAGAGTCCACTCCCTCTACCTGATCCTCCCCTTGCTCCTGGTGCTCCTGATCTCCGGCGTGGCCATCACTGTGTGGCGCTGCCACTCCCGCAAGCGCTCGGAACGCAACCCCGCCCTGGGCCACACCCACCGGGACCCCACCCTATCGTTGGTCTCCATGGACCAGTGGGGGCGGGACCTCCACGACCACTCGGAGCTCAGCGTCAACAGCAGCCCCGTCGACCCGGGCTTGGAGGTCACGTCGGCGAGGGGAGGCAGAGGAGCCCCGCCCCCGTCTTACGACGAGGCGGTCGGCCACACAGATGTGCACATAGAGACAGAGCCTCCTCCTCAGTATGAGGACATCATTGGCCATGGGAAGtgaagtgacccccccccccccccatgccctGTCTCAACCGGACCCCATCCAGctagatcaggggtgtcaaactcattccatggagggccgtcTGTCTGCTggtgtttgttttttttcttctcaattcAGACCAGCTGAGGGGAGGTACTAACTAATCAATGACCTTAATTCGTCAGTCaggatgaagggaggagggaaaACCTCGGTGGAATAAGTTTGACACATGAGCTTAGATCCTCCTGCCCGGTCTCACCCTCCTGCTCACCTCCCTCTAACTGTTATGTTACTACACTAACACAGAGATGTTGGATGCAATAACGTTGATGCTTGCACTGACCATCGgataggggtggagggatggtgaATATGATACCAAATGTTTGATTTTGCTATACCCAAATGTACAGTTATTTAACCATACTGCCATACATCAGTGATGTTATGAGTACGCTGGAGGTTTGGGGCTTGATGAATGGTGTAAAGTAAAAAAAGAACTGTTCTGATTTCCATACTTCTAAAAAGGAGAGAAATATCAAATCTGATAACTAAAGTTATTTTCGAAACATGAACATTTAAAAAGTATTATTTCAAGCTGTGTGCTTtctgatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatattatatatgtgtgtgtatgttgttttgAATGTTCGGGGAgtgaattgtaaaaaataaaatgaaaaaaaagtTTTTTGGTTAGCCAGTAGTAGCTTTGTACACATAGACTTGGATGGATCTATCCCAGTGTCATATTAATTAGTCAGGGACAGTCAATATTCTCAGACCATATTCCCTAAGGGTGCATCCCAaattataccctattccctatgtagtgtactaatTTTGACTCGTCCATATGGGtattagtgcactaaatagggcatAGAGTCTCCGTGTGACACTATGGGAGCTGTGCTGGCATGGAGCGCAGCGTCAATTACCCATTTTCTCTCTTTGGGCTACATACAGTATTAAATGTCACTACgcacagtgtatgtgtgtgtgagcgcatttttattttactgcggaTAACAACACCGACTACATTGATAATAATGGTGTGAATAACATGAGGTGTGCGTGAATGAAGGCACTTTGTGTTGTGGCAGTTGGTTTGGTTCTATTCAGCACTACCAATAATACTCACCAATAATGTCATCAGCTTTTGGGCGACTGTATATTTTACATGCCAATTATGCAGCTGGGGGACTAAATATAGACATCCTAAACACTAAATATCTGTGTAATATTCATTATTATAAGTGACATTGATACATGTAATATGACGATGGCCCTGTAAACACTTATTTCTTGAGACAATGTAGTTTGCCCGGGGTTCAACCCTATCCGCGTCAAAGTGCGTTGACATTTTAACAGTAATTCCCGATTGTGCCGACATTGCAACGTGTACTGTTAATGCGATCTCAGCAAACGTTGGGAACGTTGCCTTTAGAAGGCGTATTGTCGACAGCACTCTACATATTGAGGTACGGCCTTTGTCTGCACAATAATGTTTACACCGTAATTGTGCCGTGTCTCTACAAAAATAATCACACAGCGTTGTTGAGATTTTTTTTGCGTTGCATCACAACCATTGTGCCAAATGCGTTATGCATCAGTTGTAGGACTTGAGTGTGCACGGGGCCTGTGTAATCTGTACACTGCAGATGTATGAGAGGACTGATGTATTTTGTTGACCTGTGGAACTGCAGCACTTATCTCTATGCTATATGACCTGTGATTGGGATGTGCTGGTTGAAGTAGACATTTTGGTTGGGTTTATGGCCCTGTCCAGAAATGGCCCCTACCCTTTTAACCAGGGCtctccaatcctgttcctggagagcgacCTTCTTGTACAGTTTCACTCCAACCCctgttgtaactaacctggttcagCTCATCAACCAGCTACTTATTAGAAtaaggtgtgctagattagggttggagagagaacctacaggagggtagctctctaggatcagagttggagagagaacctacaggagggtagctctccaggatcagggttggagtgaacctacaggagggtagctctccaggaacagggttggagtgagaacctacaggagggtagctctccaggttGACAGCAGATAAGTTTACTTCATTTCACgaaattctactcattttgccatggggtagtTTAACAGCAAATGTTTTGCACGTTTTGCATTAGGGTGGAGATATTTTTTTTTGTGCAGTTTTTAATATCTGATTGAGATTAACAAATTCAATAGGGGCCCCGGGCTGATAATTTCACCATAATAAAAGGTTTAGATTGCTGGCCACTAAAACAAGCAATCTAAAAATGTTTAGCTGACATGAGCTAATTGAATGACTATCAGTGACTTGACAtaagagaaactgctgatgcagGAAATTGCACTTTGTGTAttctattctaactctcaacagtagtAAGTTGATACCCTGACAGTTCCTATTATCATATTATTGATCTGATGGCCTTCAAAAGAGAGGCCGTCAGTTGCCCAGCCCTGTGCTAAAGCAATATGGTGATAGTTCCACCTTTccctctgataggctaggtgGAATAGTTGCTATTTTGCTTACATCTGTCCAATCATTTCAGATCTTTTAAGTGTACACAGGTGGTAGAATATATGAGTTTCTGGACATGACCTATTATTGTACTGTTACCTTTTTAAATTCTGTTTTTTACAATGCCTTAAGCAAATACATCCATGTAAATATATGGCCAACCTTTGGATATGTACTGAGCTTGAATTCATTTGTAATAAAATACTTTCAAAATGTGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12954 lncRNA downstream 46662 11998493 ~ 11999439 (-) True G10871
TU12882 lncRNA downstream 146428 11899466 ~ 11899673 (-) True G10806
TU12876 lncRNA downstream 153077 11892824 ~ 11893024 (-) True G10800
TU12873 lncRNA downstream 154622 11891265 ~ 11891479 (-) True G10797
TU12872 lncRNA downstream 155456 11890038 ~ 11890645 (-) True G10796
TU12918 lncRNA upstream 16863 12069609 ~ 12072681 (-) True G10835
TU13005 lncRNA upstream 55509 12108255 ~ 12108896 (-) True G10922
TU13006 lncRNA upstream 56292 12109038 ~ 12109576 (-) True G10923
TU13008 lncRNA upstream 58474 12111220 ~ 12111518 (-) True G10925
TU13036 lncRNA upstream 92333 12145079 ~ 12146085 (-) True G10953
XM_021619007.2 mRNA downstream 211384 11832689 ~ 11834717 (-) True uts2d
XM_021618896.2 mRNA downstream 227020 11810708 ~ 11819081 (-) False LOC110534151
XM_036989305.1 mRNA downstream 243704 11799415 ~ 11802397 (-) True LOC110524396
XM_021618655.2 mRNA downstream 620135 11412825 ~ 11425966 (-) True LOC110533997
XM_036940651.1 mRNA downstream 634266 11313871 ~ 11411835 (-) False LOC110533913
XM_021619862.2 mRNA upstream 20333 12073079 ~ 12089590 (-) False tab3
XM_021619898.2 mRNA upstream 20333 12073079 ~ 12089590 (-) False tab3
XM_036941990.1 mRNA upstream 20333 12073079 ~ 12089596 (-) False tab3
XM_036941859.1 mRNA upstream 20333 12073079 ~ 12089760 (-) True tab3
XR_005035752.1 mRNA upstream 134155 12186901 ~ 12193596 (-) False LOC118938491
TU12868 other downstream 172210 11873105 ~ 11873891 (-) True G10792
TU12850 other downstream 189711 11855710 ~ 11856390 (-) True G10776
TU12351 other downstream 400398 11645080 ~ 11645703 (-) True G10343
TU12268 other downstream 482976 11562737 ~ 11563125 (-) True G10263
TU10337 other downstream 2455515 9567941 ~ 9590586 (-) True G8455
TU13053 other upstream 134158 12186904 ~ 12205391 (-) False LOC118938491
TU13056 other upstream 134158 12186904 ~ 12205391 (-) False LOC118938491
TU13135 other upstream 216774 12269520 ~ 12269786 (-) True G11037
TU13302 other upstream 362619 12415365 ~ 12415672 (-) True G11194
TU14401 other upstream 1167091 13219837 ~ 13220334 (-) True G12173

Expression Profile