RNA id: TCONS_00026002


Basic Information

Item Value
RNA id TCONS_00026002
length 296
RNA type processed_transcript
GC content 0.41
exon number 4
gene id XLOC_013090
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 48523937 ~ 48556827 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACTAGACATATTCAAACTCTCGTCAGGCCACAAAATGGAAGATTTTCAGATTATACATTCATTTAGCATCACTCCGAATAGGCATTAAGGGTACATCATGCTCTGTTCGTTTGTGTGAGAGAACTGCAAAGAGCGACACGATCCATCTACGACTACATGATACTTCAGCTGACTGACATCTACATGTATCTGAGGAGCACAATGACACATTCAATCTGATGTTCAGGTGTATATCAGGATTGTGAACAGACGTTTCAGTGATATGATACAGAAGATGATGAAGCGCAGGACTGT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000139481

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027182 lncRNA upstream 337406 48184059 ~ 48204254 (+) False XLOC_013087
TCONS_00027183 lncRNA upstream 337406 48184507 ~ 48204254 (+) True XLOC_013087
TCONS_00026942 lncRNA upstream 416772 48085972 ~ 48124888 (+) False XLOC_013085
TCONS_00026941 lncRNA upstream 416772 48085972 ~ 48124888 (+) True XLOC_013085
TCONS_00025994 lncRNA upstream 450558 48085920 ~ 48091102 (+) False XLOC_013085
TCONS_00026012 lncRNA downstream 571557 49124765 ~ 49156952 (+) True XLOC_013098
TCONS_00026013 lncRNA downstream 640616 49193824 ~ 49214852 (+) False XLOC_013099
TCONS_00027185 lncRNA downstream 640657 49193865 ~ 49215023 (+) False XLOC_013099
TCONS_00027186 lncRNA downstream 646082 49199290 ~ 49215023 (+) False XLOC_013099
TCONS_00027187 lncRNA downstream 653924 49207132 ~ 49215023 (+) False XLOC_013099
TCONS_00025999 mRNA upstream 53785 48428713 ~ 48487875 (+) False XLOC_013088
TCONS_00025996 mRNA upstream 55255 48423973 ~ 48486405 (+) False XLOC_013088
TCONS_00026001 mRNA upstream 56374 48446704 ~ 48485286 (+) True XLOC_013088
TCONS_00025997 mRNA upstream 92586 48424015 ~ 48449074 (+) False XLOC_013088
TCONS_00025998 mRNA upstream 92645 48428126 ~ 48449015 (+) False XLOC_013088
TCONS_00026003 mRNA downstream 23319 48576527 ~ 48643857 (+) False XLOC_013091
TCONS_00026004 mRNA downstream 55158 48608366 ~ 48640240 (+) True XLOC_013091
TCONS_00026005 mRNA downstream 117533 48670741 ~ 48738174 (+) True XLOC_013092
TCONS_00026006 mRNA downstream 205708 48758916 ~ 48760465 (+) True XLOC_013093
TCONS_00026007 mRNA downstream 240328 48793536 ~ 48812996 (+) False XLOC_013094
TCONS_00026000 other upstream 103047 48438497 ~ 48438613 (+) True XLOC_013089
TCONS_00025985 other upstream 1964521 46577021 ~ 46577139 (+) True XLOC_013073
TCONS_00025947 other upstream 2966482 45526483 ~ 45575178 (+) False XLOC_013054
TCONS_00025943 other upstream 3282563 45258981 ~ 45259097 (+) True XLOC_013050
TCONS_00025939 other upstream 3490710 45050835 ~ 45050950 (+) True XLOC_013048
TCONS_00026020 other downstream 858209 49411417 ~ 49447042 (+) True XLOC_013104

Expression Profile

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