RNA id: XM_021623328.2


Basic Information

Item Value
RNA id XM_021623328.2
length 4568
RNA type mRNA
GC content 0.49
exon number 16
gene id zfyve9b
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13048441 ~ 13062930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGGGGggcagaaggagaggggggaataGAGGGAAAACCTCCCTCTGATAGTGAGCAAGACTGTTTTATTTTCTTCGCTACTGTTACAAAATGTTGAAGTTCTTCAGTGCCCGGGACGATGAGAATGAAAGCCTCTTGGGTGCATTGACAGACGATGAATCGGATGCTCCGTCTCTGATGGATGCTAAGCACCACTGGCTCCACAGACCCTGTCTGCTGATGCTCGAAGATGGTGATGTCACAAAGCCAGGACAGCTGGGCTGTGGTCACATCGGATCAGAGTCCCCTGCAAAATCCAAAATCCCAGGGGCGACAAAAGAGGGTCCCATTTCCCAACTAGAGACCCCCACTCAGAGGCTGATGAGACAGCTGGAGGAGGGGAACTGCGCTGTGACAACTCTCTCCACATGGCATTTCGGGAAGGCCTCCACCCCTTTGATGCTCATACCCTCCAAAGTGCCAGAGGTGGAgatgaaggaggagaagaagaggcctCAGCTGCCCTCCTTCAAGGAGGACTCTGTGGTTGAGGAGAAGGAGCTGGAAGAGAGTGAACGTAAGCTGCAGGACTCACCCAGTGGCTCAGATGGCATAGGTCCTGACCTGGACGCCACGTCTGATCGTCCTGTGGAGGAGCTCTATGAAGGCAGCCAGACCCAGGGGCCCAGACTGGGGCTTCAGAACCAGACCAAAGCCAACGGGCTAACTAATGATGTGACTAATGCCAACAGAGCACAGGTAGACAGTGAAGAGGGAGCTGTGGGGGACTGCACGCCTTCCCCTATGTCTCCGTCAGTGGATCCAGACAATGAGCTACAGGCCGGCCCCACAGGCATTCTGTCCAGGGAGCGAGGCACTATCCTGGGGGAGGTGGCCCCCGTGTGGGTCCCTGACGCCCATACGCTGGTCTGTATGATGTGTGAAGTCAGGTTCACCTTCACAAAGAGAAGGCACCACTGCCGCGCCTGTGGCAAGGTATTCTGTTCAGTGTGCTCCGGTCTGAAGTTCCGACTAACACACCTGGATGGGAAGGAGGGGCGTGTCTGTGTCTCCTGTCACTCAACTCTAGTGAAAGgaaccCCTCCCAGGGGGAGACGGAGGGTGTGGTTTGCTGATGAAATCCTATCCAATGAGAAATCAGACTCTGCTCCTTGTACACCAATCAGAGGCCCCACCTTCTCACCGCTATTATTGAGGAGAAGTATAGCTGCTACAATCAGAAGCGCCACTGgctcaccacagaccagcaggaGGACACCAATAGCACAGGGGCCGCCCCTGCtcaatCCTCTGCAGGAGGTGTGTGGGCCCTGTGGCTGGGGTACAGCAACCCTGGTCAGTAGCCACATCAGTAGCTCTGCCAACCTCATCCCACTGGATggcctccctcccatcctcaccTCTACTGGAGTCAAAGGAGACTACACGGTGGAGGAAAGGCCCTCTGAGAGGGTTCTCATCCAGGACCTGGAGAGCGGCAGGCcaaactccctggtctttgtccTCAATGCCAACCTACTGGCCATGGTCAAGCTAGTCAACTATGTAAACAGGAAGTGCTGGTGTGTGACGTCGAAGGGCATGCACGCGGTGGGCCAGGTGGAAGTGGTGGTGCTGCTGCAATGTCTGCCTGAAGAGAAGAGCTTCCCCAAAGACATCTTCAGCCACTTTATACAGCTCTACAGGGACGCCCTCACAGgCAAGGTACTGAGCCACCTGGGTCTCTCCCAGTTCTCCAGTAGTTTCCTGGGCTGTGAGGAGCATGCAGGATTCCTCTGGGTGCGCCCCACCCTCCAGTCCCTGCAGGGTCTCCCTATGCCCAACCAGCCCTTTCTCTTTGGCCTGCTGATCCACCGGGCTGAGGTGCCCTGGGCCAAGGCTTTCCCCCTGCGCCTCATGCTCAGATTGGGGGCTGAGTACAGATTTTACCCCTGTCCTCTGTACAGCGTGCGCTTCAGGAAGGCTCTGTTTGGGGAAACCGGCCACACCATCATGAGACTACTAGTAGACTTCAGGAATTACCGGTACACTCTGCCAGTGGTGCCTGGACTCACTGTAGATCTGGAAGCTCAGAGGACCTGCATTAAAATCCCTACCAACAGCTATGATGAGctgATGAAGGCTTTGAATAAGTCCAATGAGCATGTGCTGGCCATGGGGGCCAGCTTCAACGTGGCGGCAGACTCCCACCTCATCTGTGTTCAGGGGGACGATGGCGAGTACCAGACCCAGGCCATCAGCATCCACAATCAGCCTCGCAAAGTTACTGGTTCCTGCTTTTTTTTGTTCAGTGGAGCCCTTAAAGCAGCATCAGGATATCTGGCCAAATCCAGCATCGTTGAAGATGGGCTGATGGTGCAGATCACCGTGGAGACCATGGTGGAGCTTCGCCGGTCGCTACGGGAGATGAAAGACTACAACATTTCCTGTGGGCGGATCGACCAATCAGACAGCCAAGAGCATGTCCAGGTCCAATGGCAAGAGAAAGAATGCACTGTAAACAAGGGGGTTATTAGCCCCATTGATGGCAAGTCCATGGAGTCCATCAGCAGTATCAAGATGTTCCAGAAGTCTGAGTACAAGGCCAATGGAAAGGTCATCCGCTGGACAGAGGTGTTCTCCTTACAGAAGGGGGGTCATCCTAAGAGCCAGGGTGACCACCATACAGAACACAGCAGGCTCACAGAGAGACTGGCCCGGGCATTCTGCCTGGCACTGGGCCCACACCTCAAGTTGCTGAAGGAGGATGGTATGGCTAAGCTGGGGCTGCGCGTCACGCTGGACTCCCACCAGGTGGGGTTTGTGGCCGGCAGTAATGGCCTGCCCCTCCCAGCCCCATACCTCAAAGCCCTGGAAACAGTGCTGATCCCCATCATCCACAGCAGGGGGCGCAAGAGGAGCGAAGAACCCTTAGTCATGGAGCTCATTTTCTATATCCTGGAGAACATTTCCTAGGGGAAAGGGGGTCAAAGTGCACACACTCATCCCCACATCATCCTCTCTCCTGGTTCTCCATTTGTGCTGGTGTGAGTTCGATAGCTTCAAAACAGCATTGGTTGGAGGAGTAAGCTCTTTCATGGGACATAGTAACTCGCCTCCAGGATATATGTCTCAGCCAGCCTATAAGAACGGGTGGCTGGATGGTAAGGGGTCTGACTCACCAAAGCTCACCCTGCCTTGGCCTCTGCAGCAGTAAATATTACATGGCTTGAGAATGGTACATTTCTGTATATTTTCAATAAATACCCATATTTTGAGAATGCCTTTAAACTGGGGGCTTATTCCGTTCCAGTGGGAAAATGAGAATGACTTGAAATGTTATTTACCAGTAGACCTGTAGCTAGCTGTTTGATGCAAACTGAATTCATTAATGTTTAATAACGTTTTAAAATTCGGATGTATTTTAATTCCTCTCGATTACCCCCAAAATGCTTTACAGTCAACCTAGGGTGAATAAACATGAACACAAAGGACATCATACAAGGATTTGTCAAACATTGTTTGAAATGCTTGTGGAAATCAAGGTATAAAGTTCAATTTTCCGTCAGGATCAGTATCCGAGCAGATGTAAGGAGACAATGTCCACCTTTATTTACAGTGTCAAGGTCTCACAAAAACGCTTTGAAAGAAGCACCATAATGTTGCTCTGTCATGACAAGCAGGTCATTTACCAACTCATTGAGGTTGTTGGACTTACAGCCCTGTGAAGTAAGAATGGCATTAGCCTTGACACGTCATAGATACTGTAGACATttccagacagtcattaccattAGAGGTTGTGTCGTTGGCATTATTAGGTAATTTACAGTACACATGTCACCAGCTCAAAGTCAAACTCATATACCGGTATTATGTGTTTGCCCTAGTCCAACCCTGAACCAGGCCCCTCCCCCACACGAAGAGCTGTGGGTTGGGTGAACAATgacgagtgagaaagttacagagggtcaaagataATGCCAAGACATCAAATTTCCCGTTTTTGGAAAAGCGATTAGCATGTctgtatgatctttgaccctctgtaactttcacacatcattattcacaattaattCAGGATTATTGATAATCATGGTAGCATTATCCATAAtcaagtgtttagaaacatattctattcttatttacaataaaaatgacaatacattatttaccattcctttctattgggcacaaaataatctgacacACAATCAAAAACTGCAAATCCagccaacaagtttgtagagtcacaagcttgatgtggtcattgtgtgctaggaatatgggaccaaatactaaacttttgactactttatttacAATAATCTTTAGAGGTGTCAATTTTGAACCTTACCTTTTTTAGAAAAAAAAGAGtgttacttgttaaacaaaatctctttcttttagtataaaataatataatttcccattttttttgtatacaatatagctcagtatttttattatttattttatatagtcattattgctcatctttatcataGGTGGCAACATCAGTAAAGAGATAACATCAGGTCATAGCATGTCTCTTCATAAATTGTGTTCCATAGTAagttcagtt

Function

GO: NA

KEGG:

id description
K04679 MADHIP, SARA; MAD, mothers against decapentaplegic interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13666 lncRNA upstream 4398 13043835 ~ 13044050 (+) True G11539
TU13617 lncRNA upstream 46084 12962560 ~ 13002364 (+) True G11494
TU13626 lncRNA upstream 49859 12973692 ~ 12998589 (+) True G11500
TU13598 lncRNA upstream 109429 12938813 ~ 12939019 (+) True G11475
TU13543 lncRNA upstream 178262 12869398 ~ 12870186 (+) True G11422
TU13702 lncRNA downstream 89074 13152004 ~ 13152991 (+) True G11574
TU13715 lncRNA downstream 118882 13181812 ~ 13182548 (+) True G11586
TU14193 lncRNA downstream 147534 13210464 ~ 13210813 (+) True G11999
TU14194 lncRNA downstream 148178 13211108 ~ 13211689 (+) True G12000
TU14196 lncRNA downstream 158451 13221381 ~ 13222041 (+) False LOC110526761
XM_021624163.2 mRNA upstream 524 13034361 ~ 13047924 (+) False btf3l4
XM_036944948.1 mRNA upstream 524 13034361 ~ 13047924 (+) False btf3l4
XM_021624077.2 mRNA upstream 524 13044795 ~ 13047924 (+) True btf3l4
XM_021623210.2 mRNA upstream 32245 13011539 ~ 13016203 (+) True ptgfr
XM_036944295.1 mRNA upstream 113836 12895414 ~ 12934612 (+) True LOC110537039
XM_021624571.2 mRNA downstream 30744 13093674 ~ 13104588 (+) False LOC110537958
XM_021624652.2 mRNA downstream 30744 13093674 ~ 13104588 (+) False LOC110537958
XM_021624818.2 mRNA downstream 30744 13093674 ~ 13104588 (+) False LOC110537958
XR_002475701.2 mRNA downstream 30744 13093674 ~ 13104588 (+) False LOC110537958
XR_002475703.2 mRNA downstream 30744 13093674 ~ 13104588 (+) False LOC110537958
TU11995 other upstream 1534066 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 2887162 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3056906 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3063984 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 3588495 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 175683 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 565933 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 567106 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 1129526 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1616420 14679350 ~ 14679578 (+) True G13380

Expression Profile