RNA id: XR_002475701.2


Basic Information

Item Value
RNA id XR_002475701.2
length 3062
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110537958
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13093674 ~ 13104588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAGTACCTGCACGAGGGAAGTTACATTACAGACAGCCTGCTAGCATGTAAGTTAACTAGCTAGCCTAAAATTACACCACTTCGTAAACTCTTTCAGCAGAATATTTCATCAGAAACGGTTGgctagcaacacaacactattggAATACATTATATCACAATTATATGACGATTTACTACTTCTAAACATTTATAACATATACATTTACACATACCTCTCCTCAGTAGAACCAAAACATACTGAGAGGGAACTCCTGCGTCTGACTTGAAGGTACTGCAGGCCAGAGCAATATACTACAGAGCAATCGATACACTCACAATCCATGGATGTGAAAGGATTTAGGTGAAATACACAAGGCAATATTAACACTTGTTACAGGAGCATGTGGAGAACGGTCCAGGTCTCAGTGGCTCGagtctattttttttttgtagatttGTGACGCTTGATTGTGTATGTTGCACCAGACAATACATTTCTGCAAGTCAAAATTGATGGATTTGGTTACATCTTGACAATGGAATAGAAATTATAGCAGGTTGAGGTTTATTGGGATGAATCTGAGCTGAGCTGAGCGGTTTGAGAGGAGTGGAAGAGAGGGCCAGGGTGGCTTCTTCCCACCCCTATAGTACAGGAACCTCCTCTGTTGATTTGTAGGTCTtccattcacacatacacacacacacacacacacacagatacagcagGGGCCTAGCAGACAAAGTCAGGATGTGACATCACTCACAGGAAGAGAAGCCAAACAACTTTTTTCAGCTTTTTTTTGTCTGCGCTGCTGTGTAACTGGCTGCTGAGTGAAGTTGGAGCCTCAAGGTCTGTTGGTGGCTGGGAAGGAGAGAGTCTCCATAGGATCCGGAGAGGGACAGATCTGCCTGGATCGTTGTCCAGGGGGAATTAAAGTAAAGGGGGCTGACCACGGAACTCTCCTTGGCCTTCCAAAGACTCCCCACATCATTCCAAGCCATCCACACGGACCCCGGCCAGAGAAATGTCCCTGCATTCCCAACCGCCCCCAATGTAGAGGTCACTGCCCTCAGAACTCCTCAGAGAACACCTTAACCTGAACAAACTTATGTTCGTGAAACCTGTCCAATTACCTCTCAGGAACCCCCcgcacccaacacacacactgtccattaGTCCACCATTAAGACAATGGCGCTCTGTCTCGGACAAGTCTTCAGCAAAGACAAAACGTTCAGGCCTCGGAAGAGCTTCGAGCCTGGGACCCAGCGCTTTGAACTATACAAGAAGGCCCAGGCCTCTCTGAAGTCCGGCCTGGACCTGAGGAAAGTGGTCCAGCTTCCCGAAGGAGAGAACATCAATGACTGGATCGCTGTGCATGTGGTGGACTTCTTCAACCGCATCAACCTGATCTACGGCACGGTCAGCGAGTTCTGCACCGAGCGCACCTGCCCCATCATGTCCGGGGGCCTGCGCTACGAGTACAGGTGGCAGGACGGAGACGACTACAAGAAGCCCACCAAGCTACCTGCCTTGAAATACATGAACCTACTGATGGACTGGATTGAGACCAACATCAACAATGAGGACATCTTCCCCACAAGAGTGTTCCTTTCCCTAAGAACTTCCAGCAGGTGTGTAAGAAGATTCTGAGCCGTCTTTTCCGGGTCTTTGTGCATGTCTACATCCACCACTTTGACAGCATCTGTAGCATGGGCGCCGAGGCTCACATCAATACCTGTTAcaaacactactactacttcatCTCTGAGTTCAGCCTCATCGAGCACTCAGAACTGGAGCCCCTGAGGGCAATGACAGAGAAGATCTGTAACTAAACCACTTGGAAAATGGAGTTTACATCATTTCAGCATTCCCTGTGGCCTTCAAGAGACCCACAACTTCAATACAACCAAACACCCAAACTAAAGGAATGGATTTTGAGTGGATTTGAAGAACTAAAGTGTTATCCATCCCAAGCATTACAACGTTTGTTCATAAAGTGACATTTTCAGCCAATAGTCTATATGTTTTATGAAAAAGGACTGTTCTGCTTCCTATAGTGCTGTGACATGATGTAGCACTCCAGTCTTCTGAGCTTTATTGTAATTGTAGTAATGTTTAGTAATAACTATTCTAGCTCTGTTTTATTACGCATGTATAGTTCTTGACATCATCAACTTTGGAAATGTTTGCGGCTTCGAGGTGTTTGAGACATTTTGTAATGGATGGAAGGTCAcaaccatagagatagatagaggattcatctttgtatctgtgcaaTTATAgagtctgtgacagcatgggcattgaggctatctccatttttaagtagtacattttcttcttcacaattgggtgatccctcctgatgacctgattggacatgactccaacagggtcaccaggagggatcaaccaatgaagttggaagtccaGCCCAGTTGAccacattaaaatggtggaagctcTCAATGGAATGGAAGCCCATGCTAAAAtggccttttggccactagaggcctctatcattctctatggtaaCACCACTAGACCTGTCTCCAGTGTTTTGCATTTTTATGACAAATATGTGTGGAATGTGTCCCAGCCAGACAACTTGAAAAACAAGTGTCCAGGGATGTGCAGAATGACAAGTATGGACTCATACTGGAAATTACTGACTTAATTTTAATTTCCACAAAACCAGTTTAAACCTTGCTCTGTGAGACTGATCTGATGTGTAACTGATTCAATTTCCAAGTATTAAGAGCCTATTTACCCTTCCTGGTCTCTCCTGTTGAGTTAATTGTGTTCATTTTTGAGGAAAATTATTCATTCATCTTAAAATACTCATGACTCATTAATATAACTTGCActacaaatgtattttattttattgaacctttatttaacttaaaTACGACGCCTTAGACTATAATATAACCTACCTTGCTACTACTAGTATATTTTCTATGAATGAGAGTGCTGTCATACACCAGAAATTCCCTATTATGAAATAGGGGAAGTTGTTTTGCAATACCTGACGTCCTAGTGGCTTATTCTTTTCGTCCAAtgaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13666 lncRNA upstream 49624 13043835 ~ 13044050 (+) True G11539
TU13617 lncRNA upstream 91310 12962560 ~ 13002364 (+) True G11494
TU13626 lncRNA upstream 95085 12973692 ~ 12998589 (+) True G11500
TU13598 lncRNA upstream 154655 12938813 ~ 12939019 (+) True G11475
TU13543 lncRNA upstream 223488 12869398 ~ 12870186 (+) True G11422
TU13702 lncRNA downstream 47416 13152004 ~ 13152991 (+) True G11574
TU13715 lncRNA downstream 77224 13181812 ~ 13182548 (+) True G11586
TU14193 lncRNA downstream 105876 13210464 ~ 13210813 (+) True G11999
TU14194 lncRNA downstream 106520 13211108 ~ 13211689 (+) True G12000
TU14196 lncRNA downstream 116793 13221381 ~ 13222041 (+) False LOC110526761
XM_021623328.2 mRNA upstream 30744 13048448 ~ 13062930 (+) True zfyve9b
XR_005036094.1 mRNA upstream 32250 13048443 ~ 13061424 (+) False zfyve9b
XR_005036095.1 mRNA upstream 32250 13048443 ~ 13061424 (+) False zfyve9b
XR_002475642.2 mRNA upstream 32948 13048442 ~ 13060726 (+) False zfyve9b
XM_036944630.1 mRNA upstream 33080 13048442 ~ 13060594 (+) False zfyve9b
XM_021625024.2 mRNA downstream 12731 13117319 ~ 13118363 (+) True LOC110538273
XM_036945550.1 mRNA downstream 110183 13214771 ~ 13223903 (+) False LOC110526761
XM_036945729.1 mRNA downstream 155323 13259911 ~ 13295452 (+) False LOC110538561
XM_036945735.1 mRNA downstream 173823 13278411 ~ 13295452 (+) False LOC110538561
XM_021625573.2 mRNA downstream 174102 13278690 ~ 13295452 (+) False LOC110538561
TU11995 other upstream 1579292 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 2932388 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3102132 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3109210 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 3633721 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 134025 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 524275 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 525448 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 1087868 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1574762 14679350 ~ 14679578 (+) True G13380

Expression Profile