RNA id: XM_021624280.2


Basic Information

Item Value
RNA id XM_021624280.2
length 4534
RNA type mRNA
GC content 0.46
exon number 14
gene id mknk1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13104504 ~ 13115472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAATTCCCTATTATGAAATAGGGGAAGTTGTTTTGCAATACCTGACGTCCTAGTGGCTTATTCTTTTCGTCCAAtgaataaactacaggacatgcaAGAGGCGGGAGCTCTGCGTTTACCGCCTTACGTCACTAGCTGGATTTCACTCTGTTGTCCACCCTGACCCACCGCAAAACCCAGAGGATGACCGAGGCGCTGGAGGAGGATTTCGGCCTGTTTGGACACAGACTCCAGTTGGCAGATATGGTGAGGCAGAGCACGGTGGCAGAGTTGCAAGCCTTCCAGCACTCTCTCCAGttacAGAGTAACTCTCTGGCCCTTGGCCCAGTAGGGGACAGCTGTGGGGAACAGCAGAATGTGGTGCCCCCCACTGCCACAGAGGAGAGACAGCGCCTCTCAAAGGGCCCTCCAGAGGTGGAAGCTAGCCAGCCAGTAAGCGTCCCAGACTCAGCCAAACCAATGGAAGCCACCCAGCCAGTAAGCATTCCAGACTCAGCCAAACCAATGGAAGCCACCCAGCCAGTAAGCATTCCAAACTCAGccaaaccaaagaagaagaaaaggagGTCAAGAGCAACAGACAGCTTTACAGGAAACTTCAACGACCTATACAAACTGACAGATGAAATGCTGGGTCAGGGTGCATATGCAAAGGTCCAAGGATGCATCAGTCTTCAGAATGGGAATGAATATGCTGTGAAGATCATTGAGAAGAACGCGGGGCACAGTCGCAGCCGCGTCTTCCGTGAAGTGGAGACCCTTTACCAGTGCCAGGGCAACAAGAACATTCTGGAACTAATACAGTTTTTTGAAGATGACTCCTGCTTCTACTTGGTGTTTGAGAAGTTGCGCGGAGGCTCCATTCTGACTCACATCCAGAACCGTAAGCACTTTGATGAGCTGGAGGCCAGCCGTGTGGTCAGGGACATCTCCAAAGCTCTTCACTTCCTCCACAACAAAGGTATCGCCCACCGGGACCTAAAGCCAGAGAACATCCTGTGTGAGTCTACTGACCAGgTGTCTCCGGTGAAAATTTGTGACTTTGACTTGGGCAGTGGAGTGAAGCTTAGCAGTGCCTGTATTCCAATCACCACTCCAGAGCTCACCACACCGTGTGGCTCGGCAGAGTACATGGCTCCAGAGGTGGTGGAGGTGTTCACAGACGAGGCATCGTTCTACGACAAGCGTTGTGACCTCTGGAGCCTGGGGGTCATCCTCTATATTCTGCTCAGCGGCAGCCCCCCCTTCACTGGTCATTGTGGGACTGACTGTGGCTGGGACCGTGGAGAGACCTGCCGCACCTGCCAGAAGAATCTGTTTGACAACATCCAGGATGGCCAGTATGAGTTCCCAGAGAAGGACTGGGCCCACATCTCTGCCCAGGCCAAGGACCTCATCTCCAGGCTGCTGGTGCGGGATGCCACCCTCCGCCTCAGTGCTGCCCAGGTCCTGCAGCACTCCTGGGTGCAGGGGAATGCACCAGAGAGAGGTCTCCCAACCCCACACTTCCTCCAAAGGAACAGCAGCACCAAAGACCTGACCCAGTTTGCCGCCGACGCCATCGCCTTCAACCGCCAGCTGTCGCAGCACGACGAGGAGCAGGAGGAAGTGGTCACCACCATTGTGACCTCCATGAGGCTTTCGCCCCCCTCCAACTCCCGTCTGGCTCGCAGACGGGCACAGTCCAACGCTCAGCGCACCACCCAGGACTTCCTGCCTGCTGATGACGACAACCTCGACACTCTCGTCACCTAACCAGCTCCTGGTTTAACCCCAAGAAGACCCCGTTTTGGTGCTACTGCAGGCTCGGAGTTCCCTCGCACCTGGTTTATCCTTCTAATATAGTCGTGTGCTTCTAAGATCCCAACAGGGTCAGATTCTCTGATTTAACAATGTCAGCCTCAGAACTGCTGCCAGACTCTTTGTGCCTTCCTTTCCCCTCTTTTGTttctcctctgttccctccatcctGGTGctagtctctcttcctcccctgctcctcctctctagGTGGTGTTTACCATGTCACACCATCTGAGATGGACGATAGCTTCCGTTGGCAGGAGACTCCTGTGTAGCTTCACAGGGTTGGTAGCCTCATTGTCCAAGCTCTCATGGCCAGTGGTCTTCTTATCACCTAGAAACAGAGAGACCGGACCACAAAGGGAAGCACTTTTATCCTCTACTAAGCTAACACACACTGAGTCCCAGCTTTGTTTCAGTGATTAGTTTGGGTTGAGGTAGTTTCCTGCATTTGATAATAACCTCAGTCTATACAGAGCGCAATCCCATGTTAAGACGACAGGAATAAAGTCACTAAAACGGGTCTAAGCCTGTTCTAGTGATTCTTTTTCTATGATTAAGACTGCTAGTGATGGTTGCTTAATGCTAGCTATACTTAATTGCACGGTTATTTCCGTTAGGAATGGGTTCTTGATGATGTCCGCATGGGGCATTTAATACACGTACAGTGCATGTAGCTAGCCTGTCTTATTGTAAAAATACTTTTAATttgaaaaaacattttaatttacGTTGTGTTGGTCAAGCTGTGAAAAGGTTTTAGCGTTATTTATAGAGTTACTGAATGCTGCAAAAGTAGAGCATTACTTTTCAGTCCCTTAATAATGACCCTGTTTTTAGGGCTGGTCATACATAGGCTGTGAGGAGGGTTTCAAAACTTTCCCATAATGTCTTggtttttccagaaatcccagtttTAGGATTTTTGGAACCAGCAGGGATGAAGCATCCAACCTCTAATTTTTCATGCAGGATTTCTGGAATATATTTTGGGAATTTTTGGAATGTTTTGAGAATTCTGCAACCCAGTAATGGCAAGGCAAGCAGACACTGTGACTATGGCCTGGTATTCAGGGAATGGACTCTCTCCTTGATTTATCCTAGTAAGCCTTCTGGGGCCCTATTATTGACAGATGGGTCGATATCTACACTATGTTCAGTGTGAGTGTTTTGCCTAGACCGTTTAAGACATTGTGCTTGTGGAAGGTGGGTTACTGAATGATTTGAGAGTGCATCATTCATTTGAAAAGCATTTTATTATTTGAATCACCCTGAAATTCCATTTCTTATCTCCTTATCGAAACATCAGCTACCTGGAACACTTCTATACTTTGAAACAACTCACTCGTCATATGTATTTTGAGATTATTTGAAATGATTGCATTTCAtcagtattttaatttttttaggcATATTTGAAGTATTGATAAACTATAAGGATTACCTCAGAAACCTGAATTGCACTAGCCTGGTTGCCAGTTTGTTTGTGTTATGTTGTCACTTAATGCAAAACATGACATTACAAAGAGTTGACATGATGACACAATCAGATCTGGGGCCAAGCTAGAATTTGTATGATGTCTTTGCACATTTTTTCCAAATGATTACAGGACCATTCTGCCTTTGCTTGCTTCAAATGTGTTTAACTTATTTTCAGTCATACCACTAATAACCTGCAGCTTTCTTTTTACGCAAATTAATTTCTGTTTTGGCTATTCACACTTCACTGAATATTGTTAGAATCTGTTTAAGTGATATAGAAATCTGGAAATGtctttttgttttttaatgttgTGTTTTTTTAAACGTCCATAACTTAATTTTTTATATATTCTATATTCCAGAGGGGATGCTGTTATAAATATACCTTTCTCTGGCGGAAAGGGAATTCTAGTTTTCTATCAGTTTTTTTTAGTACTAGTTTTATTTGTGTATTGTCGGTTGGTTTGTCAGCAAATGGATCTGAATAAGTGTGCCAAAGAAACCATAGAGACTGATAGAAATAACTTGTGACGACTGTGATTGCTAGCATGTCACATTAATTTGGTTTCAGATTTTTAAGCATAAATTGGTCAGACGGCCATTTCAGCCTGCGTAACATAGTTACTGAAATGCTATTTGGTTACTGAAATGCTCTTTGGTTACTGAAATGCTCTTTGGTTACTGAAATTATTTGATTTACCTCTACCAGTTTGACTGTTTCACCTCTAAGAGCTTGTCATTTTATTAATGTGGGGACACTGATGGAAGTCTAGCACTTATTCCCCTCACCCTTTAACTTCATGTATTGCATCCCCCACCCCCATGTAAAACGGCTTGTACCCAATGCCTGGATCTCCCCCGGTTGCCATGGATACTCAATCGCTATAGCAACCGAGGGGCCTTCCTAAGCGGGCACGGACTCTCCGTCAGAGAGGGTGCAACAGATTAGGGATCTCCCAGTGGCTATGGTAAAGCCCTCTCACTCTcattagtcccaaatggcaccctatagcccacaggccctggtcaaaagtagggcactacatagggaatagggtgccatttgggacacacactaaACTCAAATCAGATGGGATAAGATACATTCATTGGCATAAGCTATGCAGCTAAATACCTTATAACCCATGTGGATGAGGTCTTATGGCAAATGTTCTAACAATGTTGCACATCAATAGCCCCTGTGGTATGCTGTTTTCCCAATAAAACCCCATTCTTTCTTATGAAA

Function

GO: NA

KEGG:

id description
K04372 MKNK, MNK; MAP kinase interacting serine/threonine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13666 lncRNA upstream 60454 13043835 ~ 13044050 (+) True G11539
TU13617 lncRNA upstream 102140 12962560 ~ 13002364 (+) True G11494
TU13626 lncRNA upstream 105915 12973692 ~ 12998589 (+) True G11500
TU13598 lncRNA upstream 165485 12938813 ~ 12939019 (+) True G11475
TU13543 lncRNA upstream 234318 12869398 ~ 12870186 (+) True G11422
TU13702 lncRNA downstream 36532 13152004 ~ 13152991 (+) True G11574
TU13715 lncRNA downstream 66340 13181812 ~ 13182548 (+) True G11586
TU14193 lncRNA downstream 94992 13210464 ~ 13210813 (+) True G11999
TU14194 lncRNA downstream 95636 13211108 ~ 13211689 (+) True G12000
TU14196 lncRNA downstream 105909 13221381 ~ 13222041 (+) False LOC110526761
XM_021623328.2 mRNA upstream 41574 13048448 ~ 13062930 (+) True zfyve9b
XR_005036094.1 mRNA upstream 43080 13048443 ~ 13061424 (+) False zfyve9b
XR_005036095.1 mRNA upstream 43080 13048443 ~ 13061424 (+) False zfyve9b
XR_002475642.2 mRNA upstream 43778 13048442 ~ 13060726 (+) False zfyve9b
XM_036944630.1 mRNA upstream 43910 13048442 ~ 13060594 (+) False zfyve9b
XM_021625024.2 mRNA downstream 1847 13117319 ~ 13118363 (+) True LOC110538273
XM_036945550.1 mRNA downstream 99299 13214771 ~ 13223903 (+) False LOC110526761
XM_036945729.1 mRNA downstream 144439 13259911 ~ 13295452 (+) False LOC110538561
XM_036945735.1 mRNA downstream 162939 13278411 ~ 13295452 (+) False LOC110538561
XM_021625573.2 mRNA downstream 163218 13278690 ~ 13295452 (+) False LOC110538561
TU11995 other upstream 1590122 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 2943218 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3112962 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3120040 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 3644551 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 123141 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 513391 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 514564 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 1076984 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1563878 14679350 ~ 14679578 (+) True G13380

Expression Profile