RNA id: XM_021625573.2


Basic Information

Item Value
RNA id XM_021625573.2
length 4058
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110538561
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13238613 ~ 13295452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAAAATAAGAGGGTGTTTTGTAACTGTCTGTCTGGCCCTCGGACTCCTCCTCCACCTAACTGTCAGTAGCAACGTTCTGGTTGAGTCCCGTTTGCCTTGTGCTAGCAAATACTGTAGCAGATTTTTTTTGTGAAAGTGATACGAAGAGCCAACAAAGGGGTTGGCTCTTTATACCCCGTTCTGTCTACCACTAAATTGTTGTTCGGAAATGTATAGGGCTGCTGGTTGCAattagccaagttatcgttccatTTGAGAGAGGTTACATTTGACAGCTCGCCACCTGGGACAGGGAGCTTTGCCTCTGCCTTACCCATGATGGCGACCCAAGAAGCGGacatGTCGCGGCGCAGTATGAGGCTGGTTTTAGGGGGATACTACCACCAGTCATCAGACGATGATGAGTCCTCCTCAGTTTCCTACAGGGAGAGCCCCgtgagggtttTTACTAAGAGGAAGACAGGTGGTCGTAAAGTGGCGGCCTCTCGTACCTCCAGCCGGGCCAACAGCGTGGCTAGCACCGCTAGCAGCAAGGGTAGTACAGTGGAGCCACCCATCAATGCTGAGGACTACATTGGGGTCTCAAGCTTGGTTCAGAGAAGGAAGACCTTCCAGGAACCTCTTGCCCCAGCCCCCAGCCTGAACCTGGCTCCCAGCCCCATGGGCTTCTCGTCCTGCCAGACCGGCCTGAACCAGGCTCCCAGCCCCAGGGGCTTCTCGTCCTGCCAGACCGGCCTGAACCAGGCCCAGAGCCAGACCAGCGCCATGGACAGCTCTGGTTACTCCTCTTCAGAGGCAAGACGTTACAGAGGATACTCTGGAGACTCCTCCTTAGGCGAACAAAGGGCTAGCGCCAGCCAGAGATCTGGCACTAACAGGACAAGTGCTAGAGCCAATTGGACCCCTCCGTTTATCCCGGCCGATGTGGGGAAGGCCATTCTAATTGCCATCCTCCTCATCCTATTGACCTTCGGCTGCTGGCTCCTTGCCCCCTTGGTATGGGCCACCCTGACTTCAGCCCTGAATGCTATCACTATGACCCTGAACCGACCTGTCATCACCCCAACTCCGCCACCTGTCTTCACTACGCCACCTGTCAAGGCTATGGATGGAGCTTCGGTATTGCATTCTGCTCTGGAAGCCAAGATGAACACCATCctgAGAGAAATTGAAATTCTTAAGAAGAAGGAACACCAGCAGAAATTTGTAACCGAGATGGTAGAGAGACTGCAGACAGACTTGGCAGACGTCAGAACAGACATGAGGGACGTGAGAGTGAGAGTGGACAGTGTGAATCCACTGGATTGGCAGCATCGTTTGAGCGAGCAGACAGCCGGCTTCATCAGTCAGGTGGGCGAGCTGAAGGACCAACACACACACGTCAAGCAGCGAGTCGCTGCCCTGGAGGACCAGAGTGCCACGctggggaAGCAGGTCTACTCTGTTCAGAACCAGCCTCCTCCAGCTCCCACAGCCAACACACACCTGACCCCTGAGCTCGAAGAGGCCATGGCCAAATGGCTGCATGAAAATGTGCCCCAGAATGAGCCACGGATGGTGAAAGAGGTTGTGAAGAACTGCAGTCCCCTATTGGCTGACAGGATGCCAGACTTTGCCTTGGAGTCCCAAGGTGCCAGTGTTGTGAGCACACGGTGTTCCGAGACGTACCGTACCCGCTCGGCATGCGTGTCCTTCCTGGGTGTACCCCTCTGGTACCCCTCTGAGAACCCCCGCACTGTTATCCAGGGTCAGGCGGTGCAAGCTGGGAAGTGCTGGGCGTTCTATGGAGCGCAGGGCACCCTGGTCATCGCCCTATCTCATCCTGCCCACATCACCCACGTCACACTGGAGCACCTGCCGGTCTCCAACGCGCCCACCGGACGCATCGACAGCGCGCCCAAGGCCTTCTCTGTCTACGGTATGTCCACTGAGACAGAAGACGGCACCTGGCTGGGAACCTTCACTTATGACCAGCACGGAGGGGCAATCCAGACCTTCCAACTGCCTAATCCTACCAGGGCCATCTATTATTTTGTGGAGCTGCGCGTTCTGAGTAACTGGGGTCACCTGGAGTACACATGCGTGTACCGCTTCCGTGTGCACGGACACATGGCCTCCTCCTCCAAGTGAGAGACGTTCATCGTCCACCTCAACCGCAGACCTCCGAGGCTTCGCTTTCATATCAGAGCAACGTTCTTTTTGAATCTCGACATTATGACGGACCATTCTAAATAAATGTCTTTATTTGGCGTAATCAGGATGGCTTCCTAAACTGGCTTCTGCCGGgtgtgaggtcagaggtcagcaaGGTTTTGTTACAATTTGCAGTTTCATTTCTGGCAGAGGTATTGACCTGGCTAATAGGAGTGTGGGGATGGGTTTTTGAGAGTTTCAAATtgaactgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgcttttgagCATGGATTATTTGTTTGCATTTTATTAACGTCCGGCCACAGCGGACAAAGATTTCAGATTGTACTTTGAATGTGTGTTTATGACAATCCCTCCTGTGTTACTGGGCTCTTATTTTGTTTAATTTCATCTGTCTTAAAATTATATACAAAGGTTTAATTATGGTTAAAAATAGCGTTGTTGGATGTATATATTGCAAGAATCAAGATGTATTGTTCATTATTTTATTAGTCCGATAAGAATAGGATGTAATATGTTTGTAAATGATTTTTCTGTTGGCCTGAATGGTTAAGTCTCGACCCACCTTGCCAATAGGCTTCCTATTACAGGATGAACTATATGATTGTAGATGATTTCTACTTTGCATTTGGTAATGCACTGGTGTTTCAATGTCCTTTATAAtaatagagactagagagaaatAGACAGGAGCACACTGAGGTTGCAACGTATTATctttcacatttaaaaaaaaaccttttccccaatttcatggtatctaattggtagttaccgtcttgtctcatcgctgcaactcccgtatgggcgaGGGTCGAGAGCCGCGCGtcttccgaaacacaacccaaccaagccttactgcttcttgacacaatgcccactaaacccggaagccagccgcaccaatgtgtcggaggaaacgccatacacctggcgaccgggtcagcgtgcactgcgcctggcccgccacaggagtcgcttgtgcgcgatgggacaaggccatccctgccggccaaacccttccctaatccggataacgctgggccaattgtgcgcagctcCATGGGTCTTCCAGTtgggctggctgcgacagagcctggactctaatCTAGAATCtccagtggcacagctagcactgtgatgcagtgccttagcccactgccactcgggaggcctggaACGTATTGTCTGAATTCAAAAATACAGCTTAGTATACATGACTTGCAGCATTTATTTTGTCTTAATTTGTATTTTTACCAATTTTGTTCAGTTTAATAGTAAATACATAATTGCTCTTACCAATTTTACTGCAATACTTGAATAACTTTCACCTCAAAGCAATGAGTCTATTGCAATGATGTCTAAATGTCAGGCTTTTCTACTTCTAAACATTTGTAAATAGCAAAAAAGTAACCTTGTACTTTTTGCTAGtgtttgctgaaaataatcaGGAACTTTTTTTATTTCATGTTTTAAATCATTATGTTTACAATTACAGTATTATGTGCAGCAGTGGTAGCTATAGACTAACAAAAGACTGATCACAAAAAGAACCTATACAGTATGATTAGCtctcaataacattttatttcggTATTGTGTTTTTCTGATGTTACGGCAGTGAAACATCATACTTAACGCTGGGTCAATTTGAAGTTTGTCCAAATAAAACAGAATATAAGTAAATCATTTCCCCATAGGAATGTAGTTCAATACCTGAAATGACTGGCTATGTATCCACCTCATTTTCAAATGCTTTTAAAACACGGAAGCCATGGTTACAACTTCCTCCTAATCATAatttcatatatacagtaccagtcaaaagtttggagacacctactcattaaaggctttttatttgtactattttctacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14214 lncRNA upstream 24811 13249144 ~ 13253879 (+) False G12014
TU14213 lncRNA upstream 24811 13253062 ~ 13253879 (+) True G12014
TU14211 lncRNA upstream 25347 13249144 ~ 13253343 (+) False G12014
TU14215 lncRNA upstream 36187 13241966 ~ 13242503 (+) True G12015
TU14204 lncRNA upstream 47456 13229775 ~ 13231234 (+) True G12007
TU14206 lncRNA downstream 121 13295573 ~ 13296966 (+) True G12009
TU14207 lncRNA downstream 1671 13297123 ~ 13298116 (+) True G12010
TU14237 lncRNA downstream 5178 13300630 ~ 13300849 (+) True G12037
TU14239 lncRNA downstream 7566 13303018 ~ 13303237 (+) True G12039
TU14351 lncRNA downstream 152812 13448264 ~ 13448757 (+) True G12126
XM_036945550.1 mRNA upstream 54787 13214771 ~ 13223903 (+) False LOC110526761
XM_021625024.2 mRNA upstream 160327 13117319 ~ 13118363 (+) True LOC110538273
XM_021624280.2 mRNA upstream 163218 13104504 ~ 13115472 (+) True mknk1
XR_002475703.2 mRNA upstream 174102 13093674 ~ 13104588 (+) False LOC110537958
XM_021556316.2 mRNA downstream 113830 13409282 ~ 13411290 (+) True LOC110485223
XM_021556420.2 mRNA downstream 130114 13425566 ~ 13431117 (+) True LOC110485322
XM_036946195.1 mRNA downstream 140564 13436016 ~ 13441528 (+) True pdzk1ip1
XM_036946379.1 mRNA downstream 439311 13734763 ~ 13753675 (+) True tm2d1
XM_021589094.2 mRNA downstream 845044 14140496 ~ 14144946 (+) True LOC110508285
TU14216 other upstream 18694 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 1764308 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 3117404 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3287148 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3294226 9983775 ~ 9984464 (+) False LOC110510920
TU14679 other downstream 333411 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 334584 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 897004 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1383898 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 1384246 14679698 ~ 14680027 (+) True G13381

Expression Profile