RNA id: XM_036947621.1


Basic Information

Item Value
RNA id XM_036947621.1
length 4404
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110486505
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14350545 ~ 14495848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAAACCAGAAAATATCATTTTCTTTCTCCTTCTgggctttgtctgtctctctctctctctctctctgtctctctctagtctactgACTTAAACATGTTGGGTGGCGTTGTTTCTCTGAATATGTTTCCTTGGGCATACTATAGCTATTTGAATAATGCCAGCATGTTTAGTGAAGTTGTATGGGGTATTGATAAAATGTCCAATTATACATTTCTCTCTGACTATAGGTTGTGTTGCTTGTAGGTATTGAAACACTGGAATAGCTATTTAGAGTCTGTTGGAAATGATCTTGTTCGACTCTGCTCAGGACGGAGTGATCACCAGAGACATCCACCGCACCTTCCCCGCTCACGACTACTTCAAAGACACGGACGGAGACGGACAGGACTCCCTCTACAAGATCTGTAAGGCCTATTCAGTCTATGACAAGGAGATTGGTTACTGTCAGGGACAGTCCTTCCTGGCTGCAGTGCTGCTACTGCACATGCCTGAGGAGCAGGCCTTCTGTGTGCTGGGGAGGATAATGTATGAGTACGGCCTGAGGGAACTCTACAAGAACAACTTTGAGGATCTGCACTGCAAGTTCTACCAGCTGGAACGACTGCTCCAGGAACAACTCCCAGAACTCTGGTCCCACTTCCAGGACCTCAATCTGGAAGCTCACATGTACGCCTCTCAGTGGTTCCTCACGCTCTTCACAGCCAAGTTTCCCCTCTGCATGGTCTTCCACATCACTGACCTGCTGTTGTGTGAGGGTCTGAACGTCATCTTCAACGTGGCTCTGGCCCTCCTCAAGACGTCCAAGGAGGACCTACTTCAGACTGACTTTGAGGGGGCTCTGAAGTTCTTCCGGGTCCAGCTGCCCAAACGCTACAGGGCTGCAGAGAACGCCCGCAGGCTCATGGAACAGGCCTGTAACATCAAGGTTCCCACCAAGAAGCTGAAGAAGTTTGAAAAGGAGTACCAGACCCTGAGAGAGAGCCAGCTGCAGCAGGAGGACCCCATCGACCGCTACCAGAGGGAGAACCGTCGGCTGCAGGAGGCCAGCATGCGTCTGGAGCAGGAAAACGATGACCTGGCCCATGAGCTGGTGACCAGTAAGATTGCCCTGCGGACCGACCTAGACCAGGCGGAAGACAAGGCAGACGTGCTGAACAAGGAGCTGCTCTGCACCAAACAGCGCCTGGTGGAgacggaggaggagaagaggaggcagGCGGAGGAGACGGCACAGATTAAAGAGGTGTTCAGGAGAGAGCTGGAGAAAGCAGAGTCAGAGATCAAGAAAACTACAGCTATCATCACCGAATACAAACAGATCTGTTCTCATCTCAGCACCAGGCTAGAGAAGCAGCAGGCTGCCACCAAGGAGGAGCTGGACATCATCAAGAGTAAGGTGATGGCGTGTGAACGCTGCAGGGAGGTGTTCAGTAAAGAAGGGCCTCTCCAGATGCCCGCTCCCAGTAGAGACAACAGGAACAGTGAGCTGGACGAGGAGAAGGACTCCCTGAAGTCCCAGCTCAGAGAACTGGAGCTAGAGTTGGCCCAGACCAAACTACAGCTGGTAGAGGCCAAGTGTAAGATCCAGGAGTTGGAGCACCAGAGGGGAGTCCTGATGAACGAGATCCAAGCGGCCAAAAATTCCTGGTTCAGCAAGACCCTGGGCTCCCTGAAGAGCTCTACGGGCAGCACCTCCcagcccccctcctcccccaaagATGGGCCCCTGTAGGCCTCTATATAGACTAccctggctgggggggggggtctggaggTCCGGAGAAGAGTCTACAGTATGCACAGGAGAGCTTATGAACACTACCTGAATAACACCTGAAACGATGCACTATTCCCTTTCCAGGGGTGGAAGATAGCCACAAGACATAGTCAGCCCTCTacacatcttcctctctctcaaacTCACCCACTTTTCCACTGGACCAGCCAACCACCCTTCTTCACTAGAGCTTTGATGGAAAAATGACGTGTCGTCATTCGTGTTGTGTGGAACCAAGATGGATAATGACTGGTAAATCTAGTGTGGGTTGTCATTTACACTGTTGGCCGGGCTCCTAGCTGTCTTCAAAAAGCCAATCATTGTGTCTTTGAAGTGAGAGATTAGCGGAGTACTATAGGAACTCTGGTCCTTATAACGCCATGGTGGACATTCAATAAAACCGCTCTGCCCACTGGTGATATATTGCTACTGCTGagtgatataaaatatatatagccTATCAGCAGGTTATGTGGCTAACTGATATTATGAGAAATCTTAAGTGCTCTAGCAGTCTTGACCCTGACTTGTAAGGATCACGCGACAGCTACAGGCAGTAGTTGACAGGCTAGGAATACGTATTTGCTGCTTAAAAAAGGCAACTACTACAGGACACCTCTTCAGCATAACACAGCTTTACGGCTCAATGAAAGGGGCGTACTGCATTCAGAATCTAAAAACTACATCTTGTTTGTCCTTTATAGTAATATTACGTAAACTATGTTGTCCTATAAATGTGTATAACTCATTATTGATCTTTTTTTTTATCTTGTACAGTTCTAAAACAAATAAGAAATGATAAGAAAAAAATAATCATTTGCAATTTGAATGTGGAGGTAATTAAGCACAGTGTGAAAGATCTGGGTCAAGTTCAAATGTCGGGAGAACCAAAGTGACATTCCTACTGGACTGTTTCATTCCTGCTTCTATAACACCATAGCCTGGTTCAATCAGACTGAACACTGGGCTCACTATTGTTTTTAAAGGTGCAGCGTAGTCTTCAATATGGTTTAACCGGGCTAAAATATATAAAGTATACCTAAAGCCTATCCACCACGTTAGGACCTACTGAGCTACTTATTCCACTGGACTGAGCTCAAATTTCAACTTCAAGTCATCGTGTGTCACTCAAGTCTTTGCACAGATCGTTCCATTGATCAGAGTGAAGCATGAACCAATCCTGAAGACAGGAGGTAACCTCATTCTAACGTAATGTTTATGAAGggctcccccatctctcttctaTTGTTAGCAGTCATTGGAGTACTCCATCTATGCTACTTGGCTGCTTTAACTGTCTCCATTTAACTCAGCCCAACTGCACCTTTACAAACCCTGACACTCACCTAACCATAACTCGTAAAGCACGGTAGTTGAATATAGAACAGACATGGCTCCCAATAACATATGAAATGTCATGATGAACCAATGAAATGGCAGAATAGAAGGGCATTCTTATAAAAAAAAAGACTGAGACCGTGAGGTGTGCAACAAGTAATTGAACATTCCAAAATGTCTATCCAAGCCAAGGTGCCCATGAGGGTTAACATATGATGGAAAGACTCAATGGCCATGCAGTATAACATATGATGGAAAGACTCTCTCAATAGCAATGGGGATTAATATACAATGGAAAGACATTCAATAGCAGCCCACTCATTACACTCTGTTCTCTAGAGCCATATTAATGCATGTTTGTGCTGTGGATAGCTTCCAACAGACCTGCCATGAACCACCGCTTTGGCCTCTATTAGAAGCACTGTAGTGTTGGATTCACCCTTTGGACAAAGACCGAGAGCGCTTGTATACATGTGTCTCCTGCCCTGACTGGTTCCAGGTGAAATGGTTTCTTCACAACTCAGTGACTGTTGTCTAAGGCCCAGAACTATGTCGATGAAATAATTAGAATTAAGCCATCTCAATATATTATACTCTCAAAAGATTGTCACCTGTGCTATGGCATTCCTGTCTGCCATTTTAAGACCAGGATGCGAGTAGGCAGGGACACGTCACATTTCTGAACCtgcttcctttccttgtctcctttcctttgtGACCACTGATCTGAAAAACCGCAACAGCTGAAAGTAATATGATGGATGCCTGTCCAGGTGTTTCACAATGGAAAGGCAGAGAAATAAGGTAGCCAGTTAAGAATATTAGGACACAGCCATGTTTTTAGGTGTGTTAAATGGACAGCATGTCTTTTATATGTGTCACATGCTGTGTAATGGTTTCAAAGTGCTTCAGCCAGAGTCCTATCAAGTTTCACAAGGCTCAATGCCTCTGTGTATGTTTGCTATGTGCACTAACATTGCGGCAATATTTTAAACActattttaaattaatttgtacTCATAAGTTATTCAGAGAGCAAACCTACTTTCTTCCTAATTTTCTGTTGCTGAGAAGACAATGGCCAAATTATAATCCAACTACAACGATACAATATTGTACAGTTATGCTATACTTCAACAGTTGTTCTGCTTTAGTTTCCAACATGGGGGAGTTGTCCTTCCCTGTTCCTCGTCATTCCCATGTGAATCTGTGACATGCTTTAACTCTAATGGTATTTTCTGCACAGTAATCATCTGACGTACATCAATAAAATTCAGTTCTCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15544 lncRNA upstream 10071 14421405 ~ 14421630 (+) True G13121
TU15066 lncRNA upstream 240886 14126330 ~ 14190815 (+) True G12692
TU15054 lncRNA upstream 332410 14099008 ~ 14099291 (+) True G12680
TU15049 lncRNA upstream 340350 14090734 ~ 14091351 (+) False G12675
TU15787 lncRNA downstream 73251 14569099 ~ 14571242 (+) True G13334
TU15813 lncRNA downstream 138115 14633963 ~ 14635553 (+) False G13359
TU15814 lncRNA downstream 138115 14633963 ~ 14635553 (+) True G13359
TU15819 lncRNA downstream 146515 14642363 ~ 14642610 (+) True G13363
TU15820 lncRNA downstream 146882 14642730 ~ 14642996 (+) True G13364
XM_021558308.2 mRNA upstream 25544 14400579 ~ 14406157 (+) True gpr52
XM_021557898.2 mRNA upstream 82074 14318536 ~ 14349627 (+) False LOC110486340
XM_036947452.1 mRNA upstream 82074 14346136 ~ 14349627 (+) True LOC110486340
XM_036947346.1 mRNA upstream 127595 14251389 ~ 14304106 (+) False tdrd5
XM_036948336.1 mRNA downstream 498089 14993937 ~ 15003427 (+) True LOC110487584
XM_021559606.2 mRNA downstream 520290 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA downstream 520577 15016425 ~ 15019092 (+) True LOC110487655
NM_001160664.2 mRNA downstream 528571 15024419 ~ 15026535 (+) True elav1
XM_036948626.1 mRNA downstream 579336 15075184 ~ 15080304 (+) False LOC110487930
TU15077 other upstream 223687 14192456 ~ 14208014 (+) True LOC110486057
TU14688 other upstream 799811 13630036 ~ 13631890 (+) False G12410
TU14679 other upstream 800413 13628863 ~ 13631288 (+) False G12410
TU14216 other upstream 1171705 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 2917319 11476664 ~ 11514382 (+) True LOC110523899
TU15838 other downstream 183502 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 183850 14679698 ~ 14680027 (+) True G13381
TU15850 other downstream 204328 14700176 ~ 14700730 (+) True G13391
TU15897 other downstream 315923 14811771 ~ 14812624 (+) True G13434
TU16116 other downstream 465706 14961554 ~ 14962003 (+) True G13639

Expression Profile